Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241784g00005 ATGGGTGTAGATTACTATAGTATATTGAAGGTAGAAAGAAATGCAACAGAAGATGATTTGAAGAAAGCATATAGGAAATTGGCAATGAAATGGCATCCTGACAAGAACCCTAACAATAAGAAAGAAGCTGAAGCCAATTTCAAGCAAATATCTGAGGCCTATGAGGTACTGAGTGATCCTCAAAAGAGGGTGATTTATGATCAGCAAGGAGAGGAAGGTTTGAAGCATACACCACCACCCGGGAATGAACCAACAAATGGATTTAACCCAAGAAATGCAGAGGATATCTTTGCAGAGTTCTTTGGAGACAACCCTTTTGGATTTGGATCATCTGGACCTCATGGGAGGTCCAAGTTCCAATCCGAGGGAGGCGGATCTTACAGCGGATACCATGCGCCGCTGAAGAAGCCGCCGCCCGTTGAGAGCAAGTTGCCATGTAGTTTGGAAGAGTTGTACACTGGTTCCACAAGAAAAATGAAGATCTCAAGGGTTGTCATGGATGCTAATGGGAGGCCAATCCCAGAAACTGAGATATTAACAATTGATATAAAGCCAGGTTGGAAAAAAGGAACAAAGATCACATTCCCAGACAAAGGTAACCAGCAACCAAACCAGCTTCCAGCTGACCTTGTTTTTGTGGTTGATGAGAAGCCACATAATTTGTTCATGAGAGATGGCAATGACCTTATTATCACCAAAAACGTGTCGCTCTCCGAGGCCATCGGCGGCACTTCGGTGAACATCACAACACTTGACCGGCGCGAGTTGTCCATTCCAGTGACTCATATCATGAGCCCGGGTTATGAGATGACCGTCGCGAAAGAAGGGATGCCGATAACAAAGGAACGGGGACATAGAGGTGACTTGAAGATCAAGTTTGAGGTTAAGTTCCCGACGAAGTTGACAGAAGAGCAAAGGGCAGGGCTCAAGAGAGCATTAGGAGGTTAA 948 0.4515 MGVDYYSILKVERNATEDDLKKAYRKLAMKWHPDKNPNNKKEAEANFKQISEAYEVLSDPQKRVIYDQQGEEGLKHTPPPGNEPTNGFNPRNAEDIFAEFFGDNPFGFGSSGPHGRSKFQSEGGGSYSGYHAPLKKPPPVESKLPCSLEELYTGSTRKMKISRVVMDANGRPIPETEILTIDIKPGWKKGTKITFPDKGNQQPNQLPADLVFVVDEKPHNLFMRDGNDLIITKNVSLSEAIGGTSVNITTLDRRELSIPVTHIMSPGYEMTVAKEGMPITKERGHRGDLKIKFEVKFPTKLTEEQRAGLKRALGG 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241784g00005 315 CDD DnaJ_C 138 301 - -
Stsc241784g00005 315 FunFam Dnaj homolog subfamily b member 136 217 - -
Stsc241784g00005 315 Pfam DnaJ domain 4 67 IPR001623 -
Stsc241784g00005 315 PRINTS DnaJ domain signature 24 39 IPR001623 -
Stsc241784g00005 315 PRINTS DnaJ domain signature 6 24 IPR001623 -
Stsc241784g00005 315 PRINTS DnaJ domain signature 62 81 IPR001623 -
Stsc241784g00005 315 PRINTS DnaJ domain signature 42 62 IPR001623 -
Stsc241784g00005 315 CDD DnaJ 4 59 IPR001623 -
Stsc241784g00005 315 SMART dnaj_3 3 62 IPR001623 -
Stsc241784g00005 315 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 313 - -
Stsc241784g00005 315 MobiDBLite consensus disorder prediction 70 91 - -
Stsc241784g00005 315 FunFam DnaJ subfamily B member 13 219 299 - -
Stsc241784g00005 315 SUPERFAMILY HSP40/DnaJ peptide-binding domain 139 219 IPR008971 GO:0006457|GO:0051082
Stsc241784g00005 315 Pfam DnaJ C terminal domain 140 298 IPR002939 -
Stsc241784g00005 315 SUPERFAMILY HSP40/DnaJ peptide-binding domain 222 307 IPR008971 GO:0006457|GO:0051082
Stsc241784g00005 315 Gene3D DnaJ domain 3 111 IPR036869 -
Stsc241784g00005 315 MobiDBLite consensus disorder prediction 109 141 - -
Stsc241784g00005 315 SUPERFAMILY Chaperone J-domain 3 111 IPR036869 -
Stsc241784g00005 315 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Stsc241784g00005 315 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Stsc241784g00005 315 Gene3D - 139 217 - -
Stsc241784g00005 315 Gene3D - 218 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241784g00005 Stsc-Chr241784 15279 18487 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241784g00005 5 67 C2H2 Transcription Factor Family AT1G74250 38.806 1.58e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241784g00005 K09510 - gmx:100796426 491.115