Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241782g00016 ATGGGGAACGGAAGTAGGCAGGGGAGGAAGAACAAGAGGAGTGGTAGTTTGAAGAACATGATGCAGTGCCTCTGCTCAGGGGAGCAGTTGAGACAAGCCGGAGGCATGGATGAGATGGCGGTTCCTTCCTCGTCGAATTCTCTTGCCACCAAGGACTATTATTCAGCCACCACCGGGAGCGGGCGTTCTGGCCAGGATGGACAACTTCAGAGGGGGCTAGATGCAGGAAATATCGAAGAAGCTGAATCGTCGTTGCGTGAGGCTGGCTGCTTGAATTTTGAGGAAGCTAGAGCTTTGTTAGGAAGATATGAATATCAGAAAGGGAATATAGAAGCTGCTTTACATGTTTTTGAGGGAATAAATATAGACACTTTGACACCAGAGATAAAAATTTCTCTTGCCAGAATAAAAGAAAACCACAGGAGACATTCCAAGAATTATGTTCCGCCGCCTATGTCTTTACATACTGTTGGCACACTGTTTGAAGCAGTTTTCCTTAAAGCGAAATGTTTGCAGGCTCTGGGAAGGTTTAAAGAAGCTGCCCAATCTTGCAAAGTTATTCTGGACTTAGTTGACTCTTCATTTCCTGAAGGCATTTGTAAAAGCCTTGGTGCTGAATGTAAATTGCAGGACACTGTGACTAAGGCAGTTGAGCTACTTCCAGAATTATGGAAACTTGTTGATTGTCCACGTGAAGTTATAATGGCTTACCGACAAGCGCTCCTACGTCCTTGGAATCTTGCTGCTGAGACCATAGCAAAGATTCAGAAAGAATTTGCTGCTTTTCTTCTTTATAGTGGAGGGGAAGTAATCCCCCCAGATCTCCGTTCACAAAAGGAAAACTCATTTGTGCCCAGAAACAACATAGAAGAGGCTATACTAATTTTGATTATTTTGCTGAGAAAAGTCTCTTTGAATGAAATTGAGTGGGATCCTTCAATTTTGGACCACCTTTCATTTGCTCTATCAGTTTCTGGGGATTTAACAGCTTTAGCCAGTCAGTGGGAAGAATTGCTTCCCGGGACTATTAATCGAAGAGAAAGGTATTATACCCTTGCTCTTTGTTATTATGGTGCTGGTCAAGACCTGGTAGCATTGAATCTTCTTAAAATATTGTTGAGTAGCAAAGAAGATCCAAAACATGTTCCAGCTTTGTTAATGGCTTCTAACATTTGTTGCAAGAACCCCAATCTTGCAGAAGATGGGGTCAACTATGCTCACCGAGTGCTAGAGAACTTGAATGGAAGATGTGACCAGTTGGAAAGTCGTGGAAATTTCTTACTTGGTATTTCACTTTCAGCACACTCAAAAATAGCTGTTTCTGATTCCGAGAGGTTTGGGAGACAATCCGAGGCACTTCGGTTTCTGGAAACTGCCAGAAGAATGACTAGAATGAGAGACCCGCTTATATTGTATTATCTCAGTTTAGAATATGCAGATCAAAGGGAGTTGGATTCTGCACTTCATTATGCAGAGTGCTTTCTTGAACTTGAAGCTATGTCTAGTATTAAAGGGTGGCTGTTGTTAGCCCGGATATTATCAGCTCAGAAACGGTTTTCGGATGCTAAATCTATTGTTAATGCTGCTTTGGATCAGACTGCAAAATGGGATCAAGGTGAATTGTTGCGAACAAAAGCTAAGCTGCAAATTGCCCAGGGTCAGTTAAGGAGTGCCTTTGACACATATATTCTTCTGCTTTCTATTCTTCATATTCAGCGGAAAACTTTTGGTCAATGGAAGAAGCTCTGTAAGGATTCTAGAGATCGTGCTTGGAACTTGGAACTGGAATTATGGCATGATCTTGCTTATATCTATATATCTCTGTCATGTTGGCATGATGCAGAGNNNNNNNNNNTCTTTCAAGATCTAAAGCCATAA 1878 0.418 MGNGSRQGRKNKRSGSLKNMMQCLCSGEQLRQAGGMDEMAVPSSSNSLATKDYYSATTGSGRSGQDGQLQRGLDAGNIEEAESSLREAGCLNFEEARALLGRYEYQKGNIEAALHVFEGINIDTLTPEIKISLARIKENHRRHSKNYVPPPMSLHTVGTLFEAVFLKAKCLQALGRFKEAAQSCKVILDLVDSSFPEGICKSLGAECKLQDTVTKAVELLPELWKLVDCPREVIMAYRQALLRPWNLAAETIAKIQKEFAAFLLYSGGEVIPPDLRSQKENSFVPRNNIEEAILILIILLRKVSLNEIEWDPSILDHLSFALSVSGDLTALASQWEELLPGTINRRERYYTLALCYYGAGQDLVALNLLKILLSSKEDPKHVPALLMASNICCKNPNLAEDGVNYAHRVLENLNGRCDQLESRGNFLLGISLSAHSKIAVSDSERFGRQSEALRFLETARRMTRMRDPLILYYLSLEYADQRELDSALHYAECFLELEAMSSIKGWLLLARILSAQKRFSDAKSIVNAALDQTAKWDQGELLRTKAKLQIAQGQLRSAFDTYILLLSILHIQRKTFGQWKKLCKDSRDRAWNLELELWHDLAYIYISLSCWHDAEXXXXFQDLKP 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241782g00016 625 SUPERFAMILY TPR-like 95 374 IPR011990 GO:0005515
Stsc241782g00016 625 Gene3D Tetratricopeptide repeat domain 434 617 IPR011990 GO:0005515
Stsc241782g00016 625 PANTHER PROTEIN NPG1 21 616 IPR043376 -
Stsc241782g00016 625 MobiDBLite consensus disorder prediction 51 67 - -
Stsc241782g00016 625 SUPERFAMILY TPR-like 446 615 IPR011990 GO:0005515
Stsc241782g00016 625 Gene3D Tetratricopeptide repeat domain 158 430 IPR011990 GO:0005515
Stsc241782g00016 625 MobiDBLite consensus disorder prediction 51 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241782g00016 Stsc-Chr241782 92949 96523 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241782g00016 6 615 Calmodulin-binding Proteins AT4G28600 54.355 0.0 609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241782g00016 K21843 - gmx:100800762 803.897