Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241782g00004 ATGGCTATTGACCTTCTTGGACCTAGTTTGGAAGATTTGTTCAATTATTGCAACAGAAAGTTTACACTGAAGACAGTGTTAATGCTTGCTGATCAATTACTTAATAGGGTGGAATATATGCATTCAAGGGGCTTCCTTCACCGAGACATAAAGCCAGACAATTTTCTAATGGGTCTGGGACGTAAAGCAAACCAGGTATACATCATTGACTATGGCCTAGCGAAAAAATACAGGGATCTCCAGACTCATAGGCACATACCATACAGGGAGAACAAGAACCTCACAGGTACAGCTCGATATGCGAGTGTTAACACTCATCTCGGAATTGAGCAAAGCAGAAGGGATGATCTGGAATCTCTTGGTTATGTTCTCATGTACTTCTTGAGAGGAAGTCTTCCTTGGCAAGGTCTGAAGGCTGGCACCAAAAAACAAAAATATGATAAAATCAGTGAGAAGAAGATATCAACTTCCATCGAGTCACTATGCAAAAACTATCCCTCAGAGTTTGTATCGTATTTCCACTACTGCCGATCACTGCGGTTTGAGGATAAGCCAGACTATTCATACTTAAAGAGGCTTTTTAGAGATTTATTTATTAGAGAAGGGTATCAATTTGACTATGTTTTTGACTGGACTATATTGAAGTATCCACAAATTGGCAGCTCTAGAGGAGGGCGGCATGGCAGTGCCAATGCCACCAATGGCAATGGCAAGGCAGCAATGAATGCTGGACCATCTGTTCAAAAGCCAGAAAAGATCTCAGCTGGGAAAGAGGTTCGGGAGAGATTCACTGCTGCTGTTGAAGGTTTCCCCCGGAGGAACCCTAGTCCTCGTGCTGAGCACACTAGACATAGGACTTATGAAGATGCAGGAGTACAAAAGGAGGTGCATCATGATCAAGAGAAGGGACGTAGCTCCTCTCGATATGGCAGTACTTCAAGAAAGGCTATTATCTCATCAACCCGGCCAAGTTCCTCGGGTGACCATACTGACATTCGTACTGGCCGACTGACCTCAGTAGCTAGCCGTACATCTACTACACAGAGAGCTCAGCCCGTGTTTGAGAACAAACAAGCAACTTTCACTCGCAGTGGATCCACACGAGCCACTCGTGATGATCCTCTGCGAAGCTTCGAGCTTCTCACTATCAGGAAGTAA 1158 0.4447 MAIDLLGPSLEDLFNYCNRKFTLKTVLMLADQLLNRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLQTHRHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKISTSIESLCKNYPSEFVSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQIGSSRGGRHGSANATNGNGKAAMNAGPSVQKPEKISAGKEVRERFTAAVEGFPRRNPSPRAEHTRHRTYEDAGVQKEVHHDQEKGRSSSRYGSTSRKAIISSTRPSSSGDHTDIRTGRLTSVASRTSTTQRAQPVFENKQATFTRSGSTRATRDDPLRSFELLTIRK 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241782g00004 385 MobiDBLite consensus disorder prediction 274 305 - -
Stsc241782g00004 385 ProSiteProfiles Protein kinase domain profile. 1 199 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241782g00004 385 Pfam Protein kinase domain 12 148 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241782g00004 385 MobiDBLite consensus disorder prediction 222 373 - -
Stsc241782g00004 385 PANTHER CASEIN KINASE-RELATED 1 302 - -
Stsc241782g00004 385 MobiDBLite consensus disorder prediction 306 368 - -
Stsc241782g00004 385 Gene3D Transferase(Phosphotransferase) domain 1 1 262 - -
Stsc241782g00004 385 SMART serkin_6 1 208 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241782g00004 385 MobiDBLite consensus disorder prediction 253 267 - -
Stsc241782g00004 385 ProSitePatterns Serine/Threonine protein kinases active-site signature. 45 57 IPR008271 GO:0004672|GO:0006468
Stsc241782g00004 385 SUPERFAMILY Protein kinase-like (PK-like) 3 211 IPR011009 -
Stsc241782g00004 385 FunFam Uncharacterized protein 1 250 - -
Stsc241782g00004 385 MobiDBLite consensus disorder prediction 224 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241782g00004 Stsc-Chr241782 44546 47970 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241782g00004 12 202 MAP Kinase Kinase Kinase AT1G62400 27.411 7.61e-11 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Stsc241782g00004 Pkinase 9.9e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241782g00004 K08960 - cam:101493293 635.18