Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241782g00003 ATGGATTCTGCAAGAAGTTGGCTTCACAAATTTCAGCCACGAGAGAAAGGGAAGAGCGCTAGCAGAAGGAAAGAAGGTGATGGAGAAGATGATAGTAATGCTGCTCCTATGGATGATGAAGCTCTTTCAAATGTCACAAAGCAGAAGGTTGCTGCAGCCAAACAGTATATTGAGAATCACTACAAGGAGCAAATGAAGAGCCTTCAGGAAAGGAAAGAACGTCGAACTATCTTGGAAAAGAAGTTAGCTGATGCTGATGTCTCTGAGGAGGATCAAAACAACCTACTTAAATTTCTAGAGAAGAAAGAAACTGAATATATGCGCCTTCAAAGGCATAAGATGGGTGTTGATGATTTTGAGTTGTTGACCATGATTGGCAAAGGTGCATTTGGAGAGGTTAGAGTATGTAGAGAAAAGACAACAGGTCATGTATATGCAATGAAAAAGTTAAAGAAAGCTGAGATGCTTCGTAGAGGCCAGGTAGAACATGTTAGAGCCGAGAGGAATCTCCTTGCAGAGGTTGACAGCAATTGCATAGTCAAACTTTATTGTTCTTTTCAAGATGATGAACATCTATATCTTATTATGGAGTACCTACCGGGTGGCGATATGATGACTTTACTTATGAGAAAGGACATCTTGACTGAAGATGAAACCCGGTTTTATATAGGAGAAACCGTTCTGGCTATTGAGTCTATACATAGACACAATTACATACATAGGGATATTAAACCTGATAACTTATTGCTCGATAGATATGGACATGTGAGACTATCAGATTTTGGACTTTGTAAACCATTAGACTGTAGTACACTTGAAGAAGCAGATCTTTCTGTAGGACAAAATGCTCAGGGATCTGCACAAAATGATGATCGCACAACTCCAAAACGTACACAACAAGAACAATTGGAACACTGGCAGCAAAACAGAAGGACACTTGCCTATTCTACCGTTGGTACACCAGATTATATTGCTCCAGAAGTCCTATTGAAAAAGGGTTATGGGATGGAATGTGATTGGTGGTCACTTGGAGCTATTATGTATGAAACGTTGGTGGGATATCCACCTTTCTATTCTGATGATCCAATGTCAACATGTAGGAAGATAGTAAACTGGAAATCTCACTTGAAATTTCCAGAAGAAGCAAGGTTGTCTCCAGAGGCTAAAGATCTTATTAGTAAGCTTTTGTGTAATGTCGCTCAGAGGCTAGGATCAAATGGCGCAGATGAAATAAAGGATCATCCATTTTTTAATGGTGTTGCATGGGACAAGTTGTATCAAATGGAAGCTGCATTTATTCCCGAAGTCAATGATGAGTTAGATACTCAAAATTTTGAAAAGTTTGAAGAGACAGATAACCATATTCTTCAATCATCATCAAGATCTGGTCCATGGAGAAAGATGCTTTCATCTAAGGACATGAATTTTGTCGGATATACATACAAGAACTTTGAAATTGTCAATGACTATCAAGTTCCTGGAATGGCTGAATTGAAGAAGAAAAGCTCCAGATCAAAGAAGCCATCCATCAAGTCACTCTTTGATGTTGATCCTGAGGGATCAGAGTTTTCTGAGGCTGTAGATGCACCTGCAACCAATCAATCAGAGGAATCTCCGAAGGAATGA 1626 0.393 MDSARSWLHKFQPREKGKSASRRKEGDGEDDSNAAPMDDEALSNVTKQKVAAAKQYIENHYKEQMKSLQERKERRTILEKKLADADVSEEDQNNLLKFLEKKETEYMRLQRHKMGVDDFELLTMIGKGAFGEVRVCREKTTGHVYAMKKLKKAEMLRRGQVEHVRAERNLLAEVDSNCIVKLYCSFQDDEHLYLIMEYLPGGDMMTLLMRKDILTEDETRFYIGETVLAIESIHRHNYIHRDIKPDNLLLDRYGHVRLSDFGLCKPLDCSTLEEADLSVGQNAQGSAQNDDRTTPKRTQQEQLEHWQQNRRTLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYETLVGYPPFYSDDPMSTCRKIVNWKSHLKFPEEARLSPEAKDLISKLLCNVAQRLGSNGADEIKDHPFFNGVAWDKLYQMEAAFIPEVNDELDTQNFEKFEETDNHILQSSSRSGPWRKMLSSKDMNFVGYTYKNFEIVNDYQVPGMAELKKKSSRSKKPSIKSLFDVDPEGSEFSEAVDAPATNQSEESPKE 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241782g00003 541 Pfam Protein kinase C terminal domain 436 481 IPR017892 GO:0004674|GO:0005524|GO:0006468
Stsc241782g00003 541 Pfam Protein kinase domain 120 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241782g00003 541 SMART serkin_6 119 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241782g00003 541 MobiDBLite consensus disorder prediction 280 299 - -
Stsc241782g00003 541 FunFam Non-specific serine/threonine protein kinase 90 202 - -
Stsc241782g00003 541 MobiDBLite consensus disorder prediction 527 541 - -
Stsc241782g00003 541 MobiDBLite consensus disorder prediction 1 31 - -
Stsc241782g00003 541 ProSiteProfiles Protein kinase domain profile. 119 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241782g00003 541 ProSitePatterns Serine/Threonine protein kinases active-site signature. 238 250 IPR008271 GO:0004672|GO:0006468
Stsc241782g00003 541 ProSiteProfiles AGC-kinase C-terminal domain profile. 418 491 IPR000961 GO:0004674|GO:0005524|GO:0006468
Stsc241782g00003 541 ProSitePatterns Protein kinases ATP-binding region signature. 125 148 IPR017441 GO:0005524
Stsc241782g00003 541 PANTHER SERINE/THREONINE-PROTEIN KINASE 35 468 - -
Stsc241782g00003 541 SUPERFAMILY Protein kinase-like (PK-like) 92 463 IPR011009 -
Stsc241782g00003 541 MobiDBLite consensus disorder prediction 499 513 - -
Stsc241782g00003 541 FunFam Non-specific serine/threonine protein kinase 203 270 - -
Stsc241782g00003 541 SMART pkinase_C_6 418 483 IPR000961 GO:0004674|GO:0005524|GO:0006468
Stsc241782g00003 541 FunFam Non-specific serine/threonine protein kinase 316 435 - -
Stsc241782g00003 541 CDD MobB_NDR_LATS-like 53 114 - -
Stsc241782g00003 541 CDD STKc_NDR_like 117 482 - -
Stsc241782g00003 541 Gene3D Transferase(Phosphotransferase) domain 1 203 435 - -
Stsc241782g00003 541 MobiDBLite consensus disorder prediction 1 45 - -
Stsc241782g00003 541 Gene3D Phosphorylase Kinase; domain 1 117 446 - -
Stsc241782g00003 541 MobiDBLite consensus disorder prediction 499 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241782g00003 Stsc-Chr241782 35302 39592 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241782g00003 1 514 AGC Kinase Gene Family AT2G20470 78.654 0.0 842
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Stsc241782g00003 Pkinase 5.9e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241782g00003 K08790 - gmx:100805940 935.636