Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241782g00001 ATGGGGCTTCGAGATATAGGAGCATCACTGCCACCAGGGTTCAGATTCTATCCCAGTGATGAAGAATTGGTGTGCCATTACCTTTATAAGAAGATCACAAACGATCAACTTCTCAAAGCCACCGCTCTTGTTGAGATTGATTTACACATATGCGAGCCATGGCAGCTTCCTGAGGTGGCAAAGCTGAATGGAAATGAATGGTACTTCTTCAGCTTCAGGGATCGCAAATATGCGACGGGGTTCAGAACCAACAGAGCAACCACTAGTGGTTATTGGAAAGCTACGGGCAAGGATCGAACGGTTCATGATCCACTCACTCATGAGGTTGTAGGGATGAGGAAGACTCTGGTGTTCTACAGGAACAGAGCTCCGAACGGCATCAAAACTGGTTGGATCATGCATGAGTTTCGGTTGGAGACCCCACATATGCCCCCTAAGGAAGATTGGGTGTTGTGTAGAGTGTTCCACAAAAGCAAAGAAGAAAACAGTGGCAAAGTTATGATGTATGATTCCATTTCCACACATAATCATCAATTATCAATAAACCATACCAACAATTTCTCTTCATCTTCTATGGCATTGGCAACCCATCATTTGAACCCCAACCACCATAACCATAACCATAATAATAATAACACTTATTATAATGCCATGAATAATTTCCTTCATCACTTCTCATCATCAAGGGACAATAATAATAATAATAATAATAACAGCAGTGTCACTCATCAAATTAGTCCCAAGGGTGATGATGGATATGGCTTCATATGGGATCACATGGATCTTGAAGATAATAGTTTGGAAGATGGTGGTGTGCCCTCATCACACTTGGAACCTATCAAATTCCAGGTCGATAATAATAATAATAAT 870 0.4126 MGLRDIGASLPPGFRFYPSDEELVCHYLYKKITNDQLLKATALVEIDLHICEPWQLPEVAKLNGNEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVHDPLTHEVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKSKEENSGKVMMYDSISTHNHQLSINHTNNFSSSSMALATHHLNPNHHNHNHNNNNTYYNAMNNFLHHFSSSRDNNNNNNNNSSVTHQISPKGDDGYGFIWDHMDLEDNSLEDGGVPSSHLEPIKFQVDNNNNN 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241782g00001 290 Pfam No apical meristem (NAM) protein 11 138 IPR003441 GO:0003677|GO:0006355
Stsc241782g00001 290 Gene3D NAC domain 19 162 IPR036093 GO:0003677|GO:0006355
Stsc241782g00001 290 MobiDBLite consensus disorder prediction 225 246 - -
Stsc241782g00001 290 ProSiteProfiles NAC domain profile. 10 157 IPR003441 GO:0003677|GO:0006355
Stsc241782g00001 290 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 233 - -
Stsc241782g00001 290 SUPERFAMILY NAC domain 8 157 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241782g00001 Stsc-Chr241782 1058 6450 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241782g00001 6 160 NAC Transcription Factor Family AT1G56010 58.025 7.51e-66 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc241782g00001 NAM 2.1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241782g00001 - - gmx:100806284 382.104