Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241781g00010 ATGGCAGCAGCTATAGATATACACAATAGCATGATGACACAAGATTATTTGTCATACTCTTGTAGCGATGAAGAGTTGATGAAAGCACTTGAGCCTTTTATTATGTCAAGTGATTATTTTTCATCCAACTCTAATAATAATAATAATATTAATAATTCCTTACCCTGTTTTTCTCTCTCACCTTCTTCTTCCCCTGCCTCATCATCACACCCTTCTTATTACAATTCCTTCACCTCTAATTACACCCCTTCACCCTTAAATTCTACCTCCCAAAGTTCCATAAGACTCAACCAACTCACACCATCTCAAATTCTCCAAATCCAATCCCAAATCCATGTTCCACAACAACAAAAGAATCAACAAGCCTTGTCCCTTGCTCCAAAGCCTGTCCCCATGAAGCACGCCGGCGCGACGAATTCCTCTTCGGCCGCGAAGCCTACGAAGCTCTACCGAGGGGTGAGGCAAAGGCATTGGGGAAAATGGGTCGCAGAGATAAGGCTACCAAAGAACCGAACCCGTCTTTGGCTCGGAACATTCGACACGGCTGAAGAAGCAGCATTGGCTTATGACAATGCTGCTTTTAAGCTAAGGGGTGAACTTGCACGGCTTAATTTCCCTCATCTTCGTCATCACGGAGCACACGTGTATGGCGAATTCGGGGAAATCAAGCCGCTACCCTCCTCGGTGGACGCGAAACTCCAAGCCATTTGTGAAAGCTTGGAGAAATCAGAAAAAGTTGTAGTGGATACAAAGCCTAAGATAGAAGAAAATAAATCAACTGAATACAACGTTGGGTTTGGTTGTGCTGAATTTGAGGATCATAAGTTTGAGAAGAAGCCGATGTTGTCTCCTCCTACGTCCGATGAATTGTCCAGCGGCGGCGGTGTTTCTTCGCCGGAATCCGATATCACCTTATTGGATTTCTCGGATCCAGATGAAATTGACAACCTTGGATTGGATTTGAAGAAGTATCCTTCAGTTGAGATTGACTGGGCGTCTATATGA 1005 0.4418 MAAAIDIHNSMMTQDYLSYSCSDEELMKALEPFIMSSDYFSSNSNNNNNINNSLPCFSLSPSSSPASSSHPSYYNSFTSNYTPSPLNSTSQSSIRLNQLTPSQILQIQSQIHVPQQQKNQQALSLAPKPVPMKHAGATNSSSAAKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDNAAFKLRGELARLNFPHLRHHGAHVYGEFGEIKPLPSSVDAKLQAICESLEKSEKVVVDTKPKIEENKSTEYNVGFGCAEFEDHKFEKKPMLSPPTSDELSSGGGVSSPESDITLLDFSDPDEIDNLGLDLKKYPSVEIDWASI 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241781g00010 334 PRINTS Ethylene responsive element binding protein signature 150 161 IPR001471 GO:0003700|GO:0006355
Stsc241781g00010 334 PRINTS Ethylene responsive element binding protein signature 172 188 IPR001471 GO:0003700|GO:0006355
Stsc241781g00010 334 SUPERFAMILY DNA-binding domain 149 207 IPR016177 GO:0003677
Stsc241781g00010 334 ProSiteProfiles AP2/ERF domain profile. 149 206 IPR001471 GO:0003700|GO:0006355
Stsc241781g00010 334 SMART rav1_2 149 212 IPR001471 GO:0003700|GO:0006355
Stsc241781g00010 334 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 3 334 - -
Stsc241781g00010 334 FunFam Ethylene-responsive transcription factor 2 148 207 - -
Stsc241781g00010 334 Gene3D AP2/ERF domain 149 207 IPR036955 GO:0003700|GO:0006355
Stsc241781g00010 334 MobiDBLite consensus disorder prediction 277 307 - -
Stsc241781g00010 334 CDD AP2 148 208 IPR001471 GO:0003700|GO:0006355
Stsc241781g00010 334 MobiDBLite consensus disorder prediction 285 304 - -
Stsc241781g00010 334 Pfam AP2 domain 150 199 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241781g00010 Stsc-Chr241781 62390 63742 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241781g00010 1 334 AP2-EREBP Transcription Factor Family AT1G78080 47.107 3.39e-79 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc241781g00010 AP2 3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241781g00010 K09286 - gmx:100815162 313.153