Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241781g00005 ATGTCTCTTCTATTAAGACGACCGCCAGGTCGCGAAGCTTATCTGGGAGATGTTTTTTATTTGCATTCACATCTTTTGGAAAGAGCCACTAAATCAAGTTCTCAGTTAGGTGAAGGAAGTATGACTGCTTTACCAATAGTTGAGACCCAATCGGGAGATGTTTCGGCTTATATTCCTACAAATGTAATCTCTATTACAGATGGCCAAATATTCTTATTCGCCGATCTATTCAATGCTGGAATCAGACCCGAGATTAATGTGGGTATTTCGGTTTCCAGAGTTGGATCTGCGGCTCAAATTAAAGCCATGAAACAAGTAGCTGAAGCTTTTGCACAATTTGCTTCTGATCTCGATAAAGCTACGCAAAATCAATTGGCAAGAGGTCAACGATTACGCGAATTACTTAAACAATCACAATCTGTTCCTCTCACTGTGGAAGAACAGATAATAACTATTTATACCGGAACGAATGGTTATCTTGATTCATTAGAAATTGGACAGGTAAGGAAATTTCTCGTTGAGTTACGTGCTTACTTAAAAACGAATAAACCTCAATTCCAAGAAATAATATCTTCTACGAAGACATTCATTGCGGAAGCGGAAGCCCTTTTAATGGAGGCTATTCAGGAACAAATGGAAATCTTTTTACTCCAGGAACAATCTGGTTGGTTCTTTGCACCCAGTTTTGGTGTAGCAGCTATATTTCGATTCATCATATTTTTCCAAGGGTTTCACAATTGGACATTAAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCACTACTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGCGCAAATACATTCCATGCTTTTAACCCAACCCAAGCTGAAGAAACTTATTCAATGGTCACCGCGAACCGTTTTTGGTCCAAAAAATTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCTGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCTTGGCCTTGAACCTACGTGCCTATGGCTTCGTTTCTCAAGAAATACGTGCAACAGAAGATCCTGAATACAAAATACATAATTATCTTAAATATCTTAACCATTTCTTTACTTTCCGATCGCCCGGAAAGAACAAAAGAAACATTTTGTTCTTTCTTCAGCAATTTCTGATCTCTAGTAGACCTCTCAGTAGGATTCGAACCCAGATGCAATTCTGA 1248 0.3894 MSLLLRRPPGREAYLGDVFYLHSHLLERATKSSSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLFADLFNAGIRPEINVGISVSRVGSAAQIKAMKQVAEAFAQFASDLDKATQNQLARGQRLRELLKQSQSVPLTVEEQIITIYTGTNGYLDSLEIGQVRKFLVELRAYLKTNKPQFQEIISSTKTFIAEAEALLMEAIQEQMEIFLLQEQSGWFFAPSFGVAAIFRFIIFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFHAFNPTQAEETYSMVTANRFWSKKFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYGFVSQEIRATEDPEYKIHNYLKYLNHFFTFRSPGKNKRNILFFLQQFLISSRPLSRIRTQMQF 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241781g00005 415 SUPERFAMILY Bacterial photosystem II reaction centre, L and M subunits 220 368 IPR036854 GO:0009772|GO:0019684|GO:0045156
Stsc241781g00005 415 Gene3D - 1 99 IPR027417 -
Stsc241781g00005 415 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 1 92 IPR000194 GO:0005524
Stsc241781g00005 415 Gene3D - 100 209 IPR038376 -
Stsc241781g00005 415 PANTHER ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 1 215 IPR005294 GO:0015986|GO:0045261|GO:0046933
Stsc241781g00005 415 Pfam Photosynthetic reaction centre protein 220 358 IPR000484 GO:0009772|GO:0019684|GO:0045156
Stsc241781g00005 415 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 98 IPR027417 -
Stsc241781g00005 415 FunFam ATP synthase subunit alpha, mitochondrial 1 99 - -
Stsc241781g00005 415 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 100 215 - -
Stsc241781g00005 415 CDD ATP-synt_F1_alpha_C 103 215 IPR000793 GO:0015986
Stsc241781g00005 415 ProSitePatterns Photosynthetic reaction center proteins signature. 246 272 IPR000484 GO:0009772|GO:0019684|GO:0045156
Stsc241781g00005 415 Gene3D - 210 356 IPR036854 GO:0009772|GO:0019684|GO:0045156
Stsc241781g00005 415 Pfam ATP synthase alpha/beta chain, C terminal domain 108 210 IPR000793 GO:0015986
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241781g00005 Stsc-Chr241781 35719 40272 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241781g00005 9 98 Primary Pumps ATPases(2) AT4G38510 34.444 3.57e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241781g00005 K02111 - mnt:24286597 376.711