Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241781g00002 ATGACCCAGCAGAATGTGGTAGTGTGCAACACCAAATCCAGCGTTGAGTTGTCGGTTTTCCCGGCGGTAACTGCGCCGCAAAAGCCACCGGTGGCCGGCGGAGGGTACATTTCGATATCAAGGAGGCCAAGGAGAGTTCTGAAGAACCTTGAGATCAATGGGGACCAAAGAATCAACGCATGGGTTGAATCCATGAGAGCCTCTTCACCTACCCATCTCAAGTCCACTACTTCTTCTTTCTCCGAAGAACATACTTCTTGGATTCTTGGGCATCCATCAGCATTGGATATGTTTGACGAAATTATCATAAGATCTATGGAGAAGCAAATTGTAATGTTCCTTGATTATGACGGAACGTTGTCCCCTATAGTTGAGGACCCTGACCGTGCTTTCATGTCGAATTTGATGAGGAAAACGGTTAAAAAACTCGCAAGGTATTTTCCAACTGCCATAGTGACTGGAAGATGCAAAGAAAAGGTATATAATTTTGTTCGGTTGGCAGAGCTATACTATGCTGGGAGCCACGGTTTGGATATTAAAGGACCAACAACAACAACTTCCAAATACAACAAAGATAGTAAGGCAGAAGCAGTTCTTTTTCAACCAGCAAGTGAATTTCTTCCCATGATAGATGAGGTGTACCAGCAATTAGTGGATAAGACAAAATCAACTCCTGGAGCTAAAGTGGAGAACAACAAGTTCTGCGTCTCAGTTCATTTTCGTTGTGTTGATGAGAAGAGATGGAGTGAACTTTTACATAAAGTGAAATCAGTGTTAAAAGAGTACCCTAAGCTTCGTCTTACACAAGGAAGGAAGGTACTTGAGATTCGCCCCACTATTAAATGGGACAAAGGCAAAGCCCTAGAATTTTTATTAGAGTCGCTCGGATTTGGCAACTGTAATGATGTATTGCCGGTTTATATTGGTGATGATCGAACCGATGAAGATGCTTTCAAGAAATTAAGAGAGAGGGGTCAAGGTTTAGGGGTTCTAGTGTCAAAATTTCCAAAGGATACAAGTGCTTCTTACTCTCTTCAAGACCCTAATGAGGTGATGGAATTTCTTCAACGCTTGGTGGAATGGAAACAAGTAACCATGCAAGCAAGTTCATGA 1113 0.425 MTQQNVVVCNTKSSVELSVFPAVTAPQKPPVAGGGYISISRRPRRVLKNLEINGDQRINAWVESMRASSPTHLKSTTSSFSEEHTSWILGHPSALDMFDEIIIRSMEKQIVMFLDYDGTLSPIVEDPDRAFMSNLMRKTVKKLARYFPTAIVTGRCKEKVYNFVRLAELYYAGSHGLDIKGPTTTTSKYNKDSKAEAVLFQPASEFLPMIDEVYQQLVDKTKSTPGAKVENNKFCVSVHFRCVDEKRWSELLHKVKSVLKEYPKLRLTQGRKVLEIRPTIKWDKGKALEFLLESLGFGNCNDVLPVYIGDDRTDEDAFKKLRERGQGLGVLVSKFPKDTSASYSLQDPNEVMEFLQRLVEWKQVTMQASS 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241781g00002 370 NCBIfam HAD-IIB family hydrolase 112 323 IPR006379 -
Stsc241781g00002 370 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 37 367 IPR044651 GO:0004805|GO:0005992
Stsc241781g00002 370 CDD HAD_TPP 111 353 - -
Stsc241781g00002 370 SUPERFAMILY HAD-like 111 361 IPR036412 -
Stsc241781g00002 370 FunFam Trehalose 6-phosphate phosphatase 203 279 - -
Stsc241781g00002 370 NCBIfam trehalose-phosphatase 108 359 IPR003337 GO:0003824|GO:0005992
Stsc241781g00002 370 FunFam Trehalose 6-phosphate phosphatase 209 368 - -
Stsc241781g00002 370 Pfam Trehalose-phosphatase 113 348 IPR003337 GO:0003824|GO:0005992
Stsc241781g00002 370 FunFam Trehalose 6-phosphate phosphatase 110 198 - -
Stsc241781g00002 370 Gene3D - 215 369 IPR023214 -
Stsc241781g00002 370 Gene3D - 110 207 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241781g00002 Stsc-Chr241781 15974 21331 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241781g00002 112 358 Trehalose Biosynthesis Gene Families AT1G70290 26.718 3.17e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241781g00002 K01087 - gmx:100794430 597.045