Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241780g00018 ATGGCGGGGAAAGAAGAGAATCGAATATTCGTCGGAGGATTGTCATGGGACGTAACGGAGCGCCAGCTTGAGCATGCCTTTGGCCGTTACGGCAAAATTCTCGAATGCCAGATTATGATGGAAAGAGATACAGGCCGTCCACGTGGATTTGGATTCATTACATTTGCAGACCGCAGGGGAATGGATGATGCAATCAAGGAAATGCACGGACGGGAAATTGGTGACCGCACCATCTCAGTCAACAGGGCCCAGCCCAAGATGGGGGGTGATGACATGGACCAAGGTTATAGAGGTGGCTACTCATCAGGAGGGAGAGGAAGCTATGGAGTTGGGGACAGGGTTGGACAAGATGATTGCTTCAAATGTGGGCGTCCAGGGCACTGGGCTCGAGATTGTCCTTTGGCAGGAGGTGGCCGTGGCAGGGGTGGTAGTTCATTTCCTTCACGACCTAGGTTTGGAGGTGCTGGTGGTGATCGCTTTAGTGGTGAACGTGATCGATACCTTGATGATCGCTACGATGGAGGGCGTTATGGGGATAGGGATCGCTTTGATTCCCGAGATTACAAATATGGAAGTCGTGATCGTTATACTAGTGACAGGTATCCAACTAGTGGAGATCGATTTGTGAGTGATCGATATGGAGGCAGCTCAGATTACGCGCAAAATGGTTATGGCAAAGAAAGAGGTTATGACCGGTATGGTGGTCCACGAGGTGGTGGTGACAGGTATGGAAGTGGAATAGCAGCTCGTGACGAAGGAAGGAATTATAGGGGCAGGCCCGGTCCGTATGATCGACCAAGCAGGGGTGCTCGTCCATCGTCATTTGACCGCTACTGA 837 0.5149 MAGKEENRIFVGGLSWDVTERQLEHAFGRYGKILECQIMMERDTGRPRGFGFITFADRRGMDDAIKEMHGREIGDRTISVNRAQPKMGGDDMDQGYRGGYSSGGRGSYGVGDRVGQDDCFKCGRPGHWARDCPLAGGGRGRGGSSFPSRPRFGGAGGDRFSGERDRYLDDRYDGGRYGDRDRFDSRDYKYGSRDRYTSDRYPTSGDRFVSDRYGGSSDYAQNGYGKERGYDRYGGPRGGGDRYGSGIAARDEGRNYRGRPGPYDRPSRGARPSSFDRY 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241780g00018 278 Gene3D - 115 151 - -
Stsc241780g00018 278 ProSiteProfiles Zinc finger CCHC-type profile. 119 133 IPR001878 GO:0003676|GO:0008270
Stsc241780g00018 278 SMART rrm1_1 8 81 IPR000504 GO:0003723
Stsc241780g00018 278 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Stsc241780g00018 278 Pfam Zinc knuckle 119 133 IPR001878 GO:0003676|GO:0008270
Stsc241780g00018 278 PANTHER SRA STEM-LOOP-INTERACTING RNA-BINDING PROTEIN, MITOCHONDRIAL 4 270 - -
Stsc241780g00018 278 MobiDBLite consensus disorder prediction 82 108 - -
Stsc241780g00018 278 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Stsc241780g00018 278 MobiDBLite consensus disorder prediction 135 278 - -
Stsc241780g00018 278 FunFam glycine-rich RNA-binding protein RZ1C 1 115 - -
Stsc241780g00018 278 FunFam Glycine-rich RNA-binding protein RZ1B isoform C 118 156 - -
Stsc241780g00018 278 SUPERFAMILY Retrovirus zinc finger-like domains 105 138 IPR036875 GO:0003676|GO:0008270
Stsc241780g00018 278 MobiDBLite consensus disorder prediction 158 201 - -
Stsc241780g00018 278 SUPERFAMILY RNA-binding domain, RBD 4 109 IPR035979 GO:0003676
Stsc241780g00018 278 Gene3D - 1 114 IPR012677 -
Stsc241780g00018 278 SMART c2hcfinal6 118 134 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241780g00018 Stsc-Chr241780 80661 85604 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241780g00018 9 88 C2H2 Transcription Factor Family AT2G19380 42.500 7.87e-14 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241780g00018 - - gmx:100809519 432.565