Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241780g00008 ATGGCACTTCAACTCAAGAAGCCTGTCTTATACACTATTATTGTAACACTATCACTTACCTCAATTACAAAACTCTTGTGTCATCAACTTTCTACACCTTTCCCTTCCTCAAATTTCATTGCTGCTGTTGCCACCCTTCTCTTTACCTTATTCTCTTTGAAAAGGAACTCTTGTAGCACTACACTCCCACCAGGGCCTCTCTCTGTCCCTATATTTGGAAACTGGTTACAAGTTGGCAATGATCTCAACCACCGTCTTCTAGCTTCATACTCACAAGCCTATGGCCCCGTTTTCCTCCTCAAACTTGGTTCCAAGAACTTGGTTGTGGTCTCTGATCCAGAGCTTGCCACCCAAGTCCTCCATTCACAAGGTGTCGAATTCGGGTCTCGCCCTCGAAACGTTGTGTTTGAAATCTTCACCGGAAATGGACAAGACATGGTGTTCACTGTCTATGGTGATCATTGGCGCAAGATGCGTAGGATAATGACACTGCCATTTTTCACCAACAAGGTTGTCCATAACTACAGCAACATGTGGGAAGAAGAGATGGATTTGGTGGTGAGTGACCTCATCAATGGCAATGCTGAGAAAGTTAGGAGTGAAGAAGGGATAGTTATCAGAAGGAGGCTTCAGCTGATGCTGTATAACATCATGTATAGGATGATGTTTGATGCAAAGTTTGAGTCTCAGGAGGACCCTTTGTTCATTCAAGCTACCAAGTTTAACTCTGAGCGAAGCCGTTTGGCTCAGAGCTTTGAGTACAATTATGGAGATTTTATACCTCTGCTTAGACCATTCTTGAGGGGCTACCTCAACAAGTGTAAGGACTTGCAGACTAGGAGGTTGGCATTTTTCAACAAATACTACATTGAAAAAAGGAGAAACATAATGGCTGCTAATGGAGAAAAGCACAAGATAAGCTGTGCAATTGATCACATCATAGATGCTGAGATGAAGGGAGAAATAAGTGAAGAGAATGTGCTTTACATTGTAGAGAACATAAATGTTGCAGCAATAGAGACAACACTGTGGTCAATGGAGTGGGCTATAGCAGAGTTGGTAAACCATCCACATGTCCAAAGAAAGATTCGTGATGAGATATCCAAAGTGCTTAAAGACCAGACAGTTACAGAATCTAACCTCCATGAACTTCCATATCTACAAGCCACAGTGAAAGAGACACTAAGACTTCACACCCCAATTCCTCTACTTGTGCCACACATGAACCTTGAGGAAGCAAATCTAGGAGGGTACAAGATCCCAAAGGAGTCAAAGGTGGTGGTGAATGCATGGTGGCTTGCAAATAACCCTGCATGGTGGAAGAACCCTCAAGAGTTTAGGCCAGAGAGGTTCTTGGAAGAGGAGAATGAGACAGAAGCAGTGGCTGGAGGGAAGGTTGATTTCAGGTTCTTGCCATTTGGTGTTGGAAGGAGGAGTTGCCCTGGGATCATTCTTGCATTGCCAATTCTGGGTTTGGTAATTGCAAAGTTGGTAACAAACTTCGACATGAAAGCTCCAAATGGAACAAACAAGGTTGATGTCTCTGAGAAAGGAGGCCAATTCAGCTTGCACATTGCTAACCATTCCACTGTTTGTTTTGATCCAATTAAGTAG 1614 0.4331 MALQLKKPVLYTIIVTLSLTSITKLLCHQLSTPFPSSNFIAAVATLLFTLFSLKRNSCSTTLPPGPLSVPIFGNWLQVGNDLNHRLLASYSQAYGPVFLLKLGSKNLVVVSDPELATQVLHSQGVEFGSRPRNVVFEIFTGNGQDMVFTVYGDHWRKMRRIMTLPFFTNKVVHNYSNMWEEEMDLVVSDLINGNAEKVRSEEGIVIRRRLQLMLYNIMYRMMFDAKFESQEDPLFIQATKFNSERSRLAQSFEYNYGDFIPLLRPFLRGYLNKCKDLQTRRLAFFNKYYIEKRRNIMAANGEKHKISCAIDHIIDAEMKGEISEENVLYIVENINVAAIETTLWSMEWAIAELVNHPHVQRKIRDEISKVLKDQTVTESNLHELPYLQATVKETLRLHTPIPLLVPHMNLEEANLGGYKIPKESKVVVNAWWLANNPAWWKNPQEFRPERFLEEENETEAVAGGKVDFRFLPFGVGRRSCPGIILALPILGLVIAKLVTNFDMKAPNGTNKVDVSEKGGQFSLHIANHSTVCFDPIK 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241780g00008 537 Pfam Cytochrome P450 63 526 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241780g00008 537 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 473 482 IPR017972 GO:0005506|GO:0016705
Stsc241780g00008 537 FunFam Trans-cinnamate 4-monooxygenase 52 530 - -
Stsc241780g00008 537 PRINTS P450 superfamily signature 389 400 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241780g00008 537 PRINTS P450 superfamily signature 337 354 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241780g00008 537 PRINTS P450 superfamily signature 471 480 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241780g00008 537 PRINTS E-class P450 group I signature 115 136 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241780g00008 537 PRINTS E-class P450 group I signature 213 231 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241780g00008 537 PRINTS E-class P450 group I signature 346 372 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241780g00008 537 PRINTS E-class P450 group I signature 91 110 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241780g00008 537 PRINTS E-class P450 group I signature 388 406 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241780g00008 537 PRINTS E-class P450 group I signature 326 343 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241780g00008 537 PRINTS E-class P450 group I signature 429 453 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241780g00008 537 PRINTS E-class P450 group I signature 470 480 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241780g00008 537 PRINTS E-class P450 group I signature 480 503 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241780g00008 537 Gene3D Cytochrome P450 53 529 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241780g00008 537 PANTHER TRANS-CINNAMATE 4-MONOOXYGENASE 43 536 - -
Stsc241780g00008 537 SUPERFAMILY Cytochrome P450 63 518 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241780g00008 Stsc-Chr241780 24862 26882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241780g00008 43 535 Monolignol Biosynthesis Gene Families AT2G30490 63.434 0.0 635
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241780g00008 K00487 - gmx:100812188 886.715