Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241780g00006 ATGACACATAATTACCATAGAAATTCATCATCTGGCAGTGAAGGTGAAAAATATAGAATTTCCAGAAGTTCTCCTTCTCATGATAGATGTAGAAGTCGATCAAGATCAAGTGGTCATACTAGGGACAGATCTCGTTCACGTAGTATAGCAGATGAATATGCTCATTCCAGGAAAAGGCACTCTAGGGAACTAGGGTCGCTTCATCATAGTGACAGAGATAAGAGTGACTTTGAGCATGATGAGGAAGGAATGAGAGGACGTGGAAGAGAGCATGGTCGTGGCAATGCAGACTTGTTAGTGGATGATAGGAGGGGACGCAGTTCTAGGTATCACAGTCGAGAGGCCCGGGATCGGAATGGGAGTAGGGACAGTTATGTGGATAGGGATTTATACAGGGAAAAGAAACGAGACGAAGCAAGCAGGAATAGGGAGGTTGATTGGGTGCATAAATCGGAGAAAGAACATGAAAAGAGCTATGATAGGGATAGAAGAGACACAATAAAAGACAGAAGTAGGGAAAGGGAGGAGGATAGGGATAGGAGACGAGAAAAGGAAAGAGGCAGGAGCAGGGAAACTGATTTTGAGAGAGATAGAAGAAGAAGAAAGGAAAGGGACAGGAGTCGGGATAATACAAGGGGTGTTGAGAGAGTCAGAGATTGGGATAGTGAAAGGGATGATAAGAATCGGGAAAGAGATCGCAATAGGGAGAGGGAGAGGCGAGATGATAGATATAGGCACGCCGATAAAGACACTACATATGGTAAGGATAAGCATCTGCGTCATGAGGATGGTGAAGACATTCGAGACAGATATAGAAAACATTCAAGACATGAGGAAACTGAATATCATCGGGAGAGAAACAGGAATTCTGATCCTGTAAAATATTATAATTCTGCGAAAAGTGCCATGGAAGAAAATGAAAGCAAGCTAGAAAGAGGTGAGGTTGAACAAGATTACTTAGATGAGGATACACTGCAATTACCAGAGCAAGAAGAGGAAGATCTCAATAGGATTAAGGAGGAAAGTAGACGTAGAAGGGAAGCAATAATGGAGAAATACAAGAAGCAGCATCAGCAAGTAGAACAGGCAGTTGAAAATGAAGGAAAAGGCAAGGAACCTGTGGACATTCCTACTGATGTTCCTGAAGCACATGATGGCAAGAATGATGGTACTGATGATGTAGAAACATCATTTGCTGTTGGGAAATCTACTCCTGAAAATTTGAATGGTGCTTCTAAGAAGATATCTGGTGCTGGTGGCCTGGGCGAGGGTACTCCTAAGAGTGAAAGATCAGACGATATGTTTTGTGATGATATATTTGGTGAGACACCAACTGGAGTTCGGAAATCAGGAAAAGGGGATGGTATACTGATTGAGAGGGTTGGTCTACATGACAATTGGGATGATGCAGAGGGGTACTACAGCTATCGTTTTGGCGAAATACTTGATGGCCGATATGAAGTCACTGCTGCACATGGGAGGGGTGTTTTTTCAACAGTGGTTCGGGCAAAGAATCTCAAGTCTGGTAATGGTGAGCCAGATGAAGTTGCTATAAAGATCATTCGTAATAATGACACCATGTACAAGGCTGGTATGGATGAGTTGGTCATACTGAAGAAATTAGTAGGTGCAGATCCAGATGATAAGCGTCATTGTGTTCGTTTCCTTTCAAGTTTTAAGTACAGGAATCACCTTTGTTTAGTTTTTGAATCTCTTAATATGAATCTGCGTGAAGTATTAAAGAAGTTTGGTCGCAATATTGGCCTTAGGCTAACAGCTGTGAGAGCATATGCAAAGCAACTATTTATTGCCCTGAAGCATCTTCGGAACTGTGGTGTTCTCCATTGCGATATAAAGCCAGACAATATGTTGGTGAACGAGGCTAAAAATGTCTTGAAGCTTTGCGACTTTGGGAATGCCATGTTTGCTGGTAAGAATGAAGTCACACCATATCTTGTCAGTCGGTTTTATCGTGCCCCTGAAATAATTCTTGGCTTGCAATATGATCATCCATTGGATATTTGGTCAGTAGGCTGTTGTTTGTATGAGCTCTATACGGGGAAAGTTCTTTTTCCAGGGCTTACAAACAACGACATGCTTAGGCTTCACATGGAATTGAAGGGTCCTTTTCCAAAGAAGATGCTGCGTAAGGGAGCATTTACTGAACAACATTTTGATCAGGACCTGACTTTTCTTGCTACTGAAGAGGATCCCGTGACAAAAAAGATGATAAAGCGGATGATTCTCAACATAAAACCAAAAGATATTGGAACAATCATCACAGGCTCTCCTGGCGAGGATCCAAAGATGTTAGCCAACTTTAAGGATCTCATGGATAAAATTTTTATCTTGGACCCAGACAAGAGGTTGACAGTATCACAAGCACTGAACCACCCCTTTATCACTGGCAAGTGA 2415 0.4219 MTHNYHRNSSSGSEGEKYRISRSSPSHDRCRSRSRSSGHTRDRSRSRSIADEYAHSRKRHSRELGSLHHSDRDKSDFEHDEEGMRGRGREHGRGNADLLVDDRRGRSSRYHSREARDRNGSRDSYVDRDLYREKKRDEASRNREVDWVHKSEKEHEKSYDRDRRDTIKDRSREREEDRDRRREKERGRSRETDFERDRRRRKERDRSRDNTRGVERVRDWDSERDDKNRERDRNRERERRDDRYRHADKDTTYGKDKHLRHEDGEDIRDRYRKHSRHEETEYHRERNRNSDPVKYYNSAKSAMEENESKLERGEVEQDYLDEDTLQLPEQEEEDLNRIKEESRRRREAIMEKYKKQHQQVEQAVENEGKGKEPVDIPTDVPEAHDGKNDGTDDVETSFAVGKSTPENLNGASKKISGAGGLGEGTPKSERSDDMFCDDIFGETPTGVRKSGKGDGILIERVGLHDNWDDAEGYYSYRFGEILDGRYEVTAAHGRGVFSTVVRAKNLKSGNGEPDEVAIKIIRNNDTMYKAGMDELVILKKLVGADPDDKRHCVRFLSSFKYRNHLCLVFESLNMNLREVLKKFGRNIGLRLTAVRAYAKQLFIALKHLRNCGVLHCDIKPDNMLVNEAKNVLKLCDFGNAMFAGKNEVTPYLVSRFYRAPEIILGLQYDHPLDIWSVGCCLYELYTGKVLFPGLTNNDMLRLHMELKGPFPKKMLRKGAFTEQHFDQDLTFLATEEDPVTKKMIKRMILNIKPKDIGTIITGSPGEDPKMLANFKDLMDKIFILDPDKRLTVSQALNHPFITGK 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241780g00006 804 Coils Coil 346 366 - -
Stsc241780g00006 804 MobiDBLite consensus disorder prediction 364 392 - -
Stsc241780g00006 804 SUPERFAMILY Protein kinase-like (PK-like) 473 803 IPR011009 -
Stsc241780g00006 804 Pfam Protein kinase domain 488 801 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241780g00006 804 MobiDBLite consensus disorder prediction 20 291 - -
Stsc241780g00006 804 Gene3D Transferase(Phosphotransferase) domain 1 546 802 - -
Stsc241780g00006 804 CDD STKc_PRP4 485 801 IPR044092 GO:0004674|GO:0006468|GO:0045292
Stsc241780g00006 804 Gene3D Phosphorylase Kinase; domain 1 456 545 - -
Stsc241780g00006 804 MobiDBLite consensus disorder prediction 364 433 - -
Stsc241780g00006 804 MobiDBLite consensus disorder prediction 1 340 - -
Stsc241780g00006 804 ProSiteProfiles Protein kinase domain profile. 486 801 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241780g00006 804 FunFam Serine/threonine-protein kinase PRP4 homolog 546 802 - -
Stsc241780g00006 804 ProSitePatterns Serine/Threonine protein kinases active-site signature. 613 625 IPR008271 GO:0004672|GO:0006468
Stsc241780g00006 804 MobiDBLite consensus disorder prediction 1 19 - -
Stsc241780g00006 804 Coils Coil 296 316 - -
Stsc241780g00006 804 FunFam serine/threonine-protein kinase PRP4 homolog 457 545 - -
Stsc241780g00006 804 SMART serkin_6 486 801 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241780g00006 804 MobiDBLite consensus disorder prediction 397 411 - -
Stsc241780g00006 804 PANTHER DUAL SPECIFICITY PROTEIN KINASE 201 802 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241780g00006 Stsc-Chr241780 11703 18415 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241780g00006 439 803 MAP Kinase Gene Family AT2G18170 29.659 1.03e-27 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Stsc241780g00006 Pkinase 1.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241780g00006 K08827 - gmx:100776908 1164.83