Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241780g00004 ATGGTTACCGATTCCCACGACTCTCGTCGCAAGCATCGCCGATCCTCCTCTCCTGACGACGCCGACAGATCCTCCAAGCGCCACAAGCACCGCCACCATACCCACCGCCATCGCCACTCCACCAAGAAACGCGACGAAGACACTGATTACGATCGCGGAACTCTTGCTACGATTCCTTCTCCATCTCCCGTTCCTAATTCTGCTCCGTATGGCTCTCTCCCTGACGACGACGTCGAAGAGGGAGAGATTCTCGAAGAAGGTGAGATTGGGAAAAAGCAGACAGAATCTGATGCGGAGCCTGGTGAAATTGAGCTGACAGGAAATCGAGATGTTCGATCCGATAACAAGATTCCGGGACTTCTCACAAAAAATTCAAAAGCTGGAAAGGACAGAAGTCATGGTAAATATGTTAGTCCTGCATTGGACACAGTAGATAAGCACCTTGGACTTAATGATGGCAACGATTCTCCTAACCAGTCAAGCCCTGAGCCCAAAGGTGGAAAGAAGGCTAGAGATACCAAAGATGGTGTGGGTAATGGGTATCTGAATCCTAAATCATCCAAAGGAGATAAGAAGCAGAATGAGGGACCTGGACACTCGAGAGGAAATGAGAAACTAAAAGGCGAGTATGGAGATGGAGAGATACAGGCAAATGGAATGACACATAATTACCATAGAAATTCATCATCTGGCAGTGAAGGTGAAAAATATAGAATTTCCAGAAGTTCTCCTTCTCATGATAGATGTAGAAGTCGATCAAGATCAAGTGGTCATACTAGGGACAGATCTCGTTCACGTAGTATAGCAGATGAATATGCTCATTCCAGGAAAAGGCACTCTAGGGAACTAGGGTCGCTTCATCATAGTGACAGAGATAAGAGTGACTTTGAGCATGATGAGGAAGGAATGAGAGGACGTGGAAGAGAGCATGGTCGTGGCAATGCAGACTTGTTAGTGGATGATAGGAGGGGACGCAGTTCTAGGTATCACAGTCGAGAGGCCCGGGATCGGAATGGGAGTAGGGACAGTTATGTGGATAGGGATTTATACAGGGAAAAGAAACGAGACGAAGCAAGCAGGAATAGGGAGGTTGATTGGGTGCATAAATCGGAGAAAGAACATGAAAAGAGCTATGATAGGGATAGAAGAGACACAATAAAAGACAGAAGTAGGGAAAGGGAGGAGGATAGGGATAGGAGACGAGAAAAGGAAAGAGGCAGGAGCAGGGAAACTGATTTTGAGAGAGATAGAAGAAGAAGAAAGGAAAGGGACAGGAGTCGGGATAATACAAGGGGTGTTGAGAGAGTCAGAGATTGGGATAGTGAAAGGGATGATAAGAATCGGGAAAGAGATCGCAATAGGGAGAGGGAGAGGCGAGATGATAGATATAGGCACGCCGATAAAGACACTACATATGGTAAGGATAAGCATCTGCGTCATGAGGATGGTGAAGACATTCGAGACAGATATAGAAAACATTCAAGACATGAGGAAACTGAATATCATCGGGAGAGAAACAGGAATTCTGATCCTGTAAAATATTATAATTCTGCGAAAAGTGCCATGGAAGAAAATGAAAGCAAGCTAGAAAGAGGTGAGGTTGAACAAGATTACTTAGATGAGGATACACTGCAATTACCAGAGCAAGAAGAGGAAGATCTCAATAGGATTAAGGAGGAAAGTAGACGTAGAAGGGAAGCAATAATGGAGAAATACAAGAAGCAGCATCAGCAAGTAGAACAGGCAGTTGAAAATGAAGGAAAAGGCAAGGAACCTGTGGACATTCCTACTGATGTTCCTGAAGCACATGATGGCAAGAATGATGGTACTGATGATGTAGAAACATCATTTGCTGTTGGGAAATCTACTCCTGAAAATTTGAATGGTGCTTCTAAGAAGATATCTGGTGCTGGTGGCCTGGGCGAGGGTACTCCTAAGAGTGAAAGATCAGACGATATGTTTTGTGATGATATATTTGGTGAGACACCAACTGGAGTTCGGAAATCAGGAAAAGGGGATGGTATACTGATTGAGAGGGTTGGTCTACATGACAATTGGGATGATGCAGAGGGGTACTACAGCTATCGTTTTGGCGAAATACTTGATGGCCGATATGAAGTCACTGCTGCACATGGGAGGGGTGTTTTTTCAACAGTGGTTCGGGCAAAGAATCTCAAGTCTGGTAATGGTGAGCCAGATGAAGTTGCTATAAAGATCATTCGTAATAATGACACCATGTACAAGGCTGGTATGGATGAGTTGGTCATACTGAAGAAATTAGTAGGTGCAGATCCAGATGATAAGCGTCATTGTGTTCGTTTCCTTTCAAGTTTTAAGTACAGGAATCACCTTTGTTTAGTTTTTGAATCTCTTAATATGAATCTGCGTGAAGTATTAAAGAAGTTTGGTCGCAATATTGGCCTTAGGCTAACAGCTGTGAGAGCATATGCAAAGCAACTATTTATTGCCCTGAAGCATCTTCGGAACTGTGGTGTTCTCCATTGCGATATAAAGCCAGACAATATGTTGGTGAACGAGGCTAAAAATGTCTTGAAGCTTTGCGACTTTGGGAATGCCATGTTTGCTGGTAAGAATGAAGTCACACCATATCTTGTCAGTCGGTTTTATCGTGCCCCTGAAATAATTCTTGGCTTGCAATATGATCATCCATTGGATATTTGGTCAGTAGGCTGTTGTTTGTATGAGCTCTATACGGGGAAAGTTCTTTTTCCAGGGCTTACAAACAACGACATGCTTAGGCTTCACATGGAATTGAAGGGTCCTTTTCCAAAGAAGATGCTGCGTAAGGGAGCATTTACTGAACAACATTTTGATCAGGACCTGACTTTTCTTGCTACTGAAGAGGATCCCGTGACAAAAAAGATGATAAAGCGGATGATTCTCAACATAAAACCAAAAGATATTGGAACAATCATCACAGGCTCTCCTGGCGAGGATCCAAAGATGTTAGCCAACTTTAAGGATCTCATGGATAAAATTTTTATCTTGGACCCAGACAAGAGGTTGACAGTATCACAAGCACTGAACCACCCCTTTATCACTGGCAAGTGA 3072 0.4368 MVTDSHDSRRKHRRSSSPDDADRSSKRHKHRHHTHRHRHSTKKRDEDTDYDRGTLATIPSPSPVPNSAPYGSLPDDDVEEGEILEEGEIGKKQTESDAEPGEIELTGNRDVRSDNKIPGLLTKNSKAGKDRSHGKYVSPALDTVDKHLGLNDGNDSPNQSSPEPKGGKKARDTKDGVGNGYLNPKSSKGDKKQNEGPGHSRGNEKLKGEYGDGEIQANGMTHNYHRNSSSGSEGEKYRISRSSPSHDRCRSRSRSSGHTRDRSRSRSIADEYAHSRKRHSRELGSLHHSDRDKSDFEHDEEGMRGRGREHGRGNADLLVDDRRGRSSRYHSREARDRNGSRDSYVDRDLYREKKRDEASRNREVDWVHKSEKEHEKSYDRDRRDTIKDRSREREEDRDRRREKERGRSRETDFERDRRRRKERDRSRDNTRGVERVRDWDSERDDKNRERDRNRERERRDDRYRHADKDTTYGKDKHLRHEDGEDIRDRYRKHSRHEETEYHRERNRNSDPVKYYNSAKSAMEENESKLERGEVEQDYLDEDTLQLPEQEEEDLNRIKEESRRRREAIMEKYKKQHQQVEQAVENEGKGKEPVDIPTDVPEAHDGKNDGTDDVETSFAVGKSTPENLNGASKKISGAGGLGEGTPKSERSDDMFCDDIFGETPTGVRKSGKGDGILIERVGLHDNWDDAEGYYSYRFGEILDGRYEVTAAHGRGVFSTVVRAKNLKSGNGEPDEVAIKIIRNNDTMYKAGMDELVILKKLVGADPDDKRHCVRFLSSFKYRNHLCLVFESLNMNLREVLKKFGRNIGLRLTAVRAYAKQLFIALKHLRNCGVLHCDIKPDNMLVNEAKNVLKLCDFGNAMFAGKNEVTPYLVSRFYRAPEIILGLQYDHPLDIWSVGCCLYELYTGKVLFPGLTNNDMLRLHMELKGPFPKKMLRKGAFTEQHFDQDLTFLATEEDPVTKKMIKRMILNIKPKDIGTIITGSPGEDPKMLANFKDLMDKIFILDPDKRLTVSQALNHPFITGK 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241780g00004 1023 MobiDBLite consensus disorder prediction 85 111 - -
Stsc241780g00004 1023 MobiDBLite consensus disorder prediction 616 630 - -
Stsc241780g00004 1023 MobiDBLite consensus disorder prediction 220 238 - -
Stsc241780g00004 1023 CDD STKc_PRP4 704 1020 IPR044092 GO:0004674|GO:0006468|GO:0045292
Stsc241780g00004 1023 MobiDBLite consensus disorder prediction 188 211 - -
Stsc241780g00004 1023 Gene3D Phosphorylase Kinase; domain 1 675 764 - -
Stsc241780g00004 1023 Gene3D Transferase(Phosphotransferase) domain 1 765 1021 - -
Stsc241780g00004 1023 Coils Coil 515 535 - -
Stsc241780g00004 1023 MobiDBLite consensus disorder prediction 583 611 - -
Stsc241780g00004 1023 Coils Coil 565 585 - -
Stsc241780g00004 1023 PANTHER DUAL SPECIFICITY PROTEIN KINASE 419 1021 - -
Stsc241780g00004 1023 FunFam serine/threonine-protein kinase PRP4 homolog 676 764 - -
Stsc241780g00004 1023 ProSitePatterns Serine/Threonine protein kinases active-site signature. 832 844 IPR008271 GO:0004672|GO:0006468
Stsc241780g00004 1023 ProSiteProfiles Protein kinase domain profile. 705 1020 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241780g00004 1023 Pfam Protein kinase domain 707 1020 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241780g00004 1023 SMART serkin_6 705 1020 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241780g00004 1023 SUPERFAMILY Protein kinase-like (PK-like) 692 1022 IPR011009 -
Stsc241780g00004 1023 MobiDBLite consensus disorder prediction 1 559 - -
Stsc241780g00004 1023 MobiDBLite consensus disorder prediction 239 510 - -
Stsc241780g00004 1023 FunFam Serine/threonine-protein kinase PRP4 homolog 765 1021 - -
Stsc241780g00004 1023 MobiDBLite consensus disorder prediction 26 40 - -
Stsc241780g00004 1023 MobiDBLite consensus disorder prediction 583 652 - -
Stsc241780g00004 1023 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241780g00004 Stsc-Chr241780 11703 20870 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241780g00004 658 1022 MAP Kinase Gene Family AT2G18170 29.659 3.60e-27 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Stsc241780g00004 Pkinase 1.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241780g00004 K08827 - gmx:100776908 1338.55