Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241780g00002 ATGGCGTCGTGTGGGTACGTGAGGTGGGAGGAGGTTTGGGTGTCGAGCGAGAAGGGAAGGAGGGAGGTGCATTACGTTCTCAGGAGAAAGGATGGGAGCTCAGATCTGGCACTTGTTGGCAAAGAGAAGAGCTTGAGGCACATGTTTTATCACTATGCGCTTCCCACCCAGAAGAAGCTTCTAGCTTCCATGGGCTCTTCTCTCTCTTTCTTCAAGCTCAAATCTCGCAGAGAGGTCATTGATTGGTTGGATTCCCTCTTCCAAGATTCCCCCGCAGAGAATTTAGCTCGTGCAGCTGATGCTGAAACCTTGAAGGATAATCAATTGGGGAAGCTGGGCCATGGTACAAAAGAATTCCTATGGTTAGGGTCTCCTTGGACTTGCAAGAAAAGAAGAAAGCACTATCAGTCATTTAAGCGAAACGGTTTTAAGATATCTGTTTATGATTTTGTATATGTTTTAGCAGAAGAAGGCAAACGCCTCGTTGCCTACTTGGAAGACATGTATGAGGATTCCAGAGGCAACAGGATGGTTGTGGTACGATGGTTTCACAAAATTGATGAGGTTGGTATCGATTTACCTCATGATTTTTGTGACCGAGAGGTTTTCTTTTCTCTTTATCTTCAAGATCTGAGTATTGAATGCATAGATGGATTGGCTACTGTCCTTAGTCCACAACATTACGAAAGGCTTCGGACTTTTGCGAGATATACTCGCTGGGAACCATTCGTATGCAGAAAACAATTTGATAACGATGATGTCAAACCCTTCGATGTAACCCAACTTAAGGGATACTGGAAACAAGATATAGTCAGATTCATGTGTGCCCCTTCTGAGTCGAAGTCTCATGGGAGCTCTGGTCTGTCTGACAATAGCCAAGGAAACTCCGATCCAGCTGCTGAGAGTAGACCTAAGAAGAGGCGACGCCTGACAAAAGTTGGTAGCAAAGAAGTGGCTGATTTGGCTGTTATTAAACTAGATATGAGTAATACTAGACCCAATACCAAAATTGGAACTGGAAAGACTCCGGTGAAGAATGTTTCTGATAACTATTTAGTTGTAGGTTCCCAAGTTGAGGTTCTCTCACAGGACAGTGGAATTAGAGGCTGTTGGTTCAGAGCCTCTATTCTTAAGATGCACAAAAATAAAGTGAAGGTTCAATATCAAGACATTCTGGATGCAGCTGATGAAACTAAGAAGCTGGAGGAATGGGTTCTGGCTTCCAGAATCTTAGCTCATGATGATCTGAGGCTACGGAAGTATGGAAGGAATAAGATTCGACCAGTCCCACCACATCATAGATTTGAAAAATCAGTTAGGGTTGATATTGGTTCTATCGTTGACGCTTGGTGGCATGATGGTTGGTGGGAAGGCATTGTTGTTGAAATCGTGTCTGAAGCTAAATATCGTGTTTATTTCCCAGGGGAAAAGAAGGTGTCGATGTTTGACCTTGTTAACTTACGACAATCTCAAGAATGGATAGGCAATGAATGGGTGAAGATGAGGGGTAGGCCTGACCTTGTGGATTCTGTATTGTCAACCTTAAAGGCTAAACAAGGTCCCTGCAAATCAAGTGAATTATCGACAGGAGATGTCATACAATCAAAGGAGGCTGATGCTGCATGCTTGGATTCTGAAAGGGATAAAACTAGGAAGCCTGAGTTGTTTCCAGACCTCTTGAAAGATGATTCACTATCTCAATTACGGTGGTCATCTAGGAAGAGGAGACGGAGTGATAAAGATAGGAGAAAGTCCCCAAACTCTCTGGAATCTGATGATGCTTCTGACAATTTTGTGATTCCAGCATTTGTGAATGTTGAACATGATGACTTCAAGTATGGAGGGGATCCTTCTGTTTTCAACTCTTCGGTTGTCCCTTCTTTAACAACTAACTTAGTTATGTGTAGGTAA 1911 0.4317 MASCGYVRWEEVWVSSEKGRREVHYVLRRKDGSSDLALVGKEKSLRHMFYHYALPTQKKLLASMGSSLSFFKLKSRREVIDWLDSLFQDSPAENLARAADAETLKDNQLGKLGHGTKEFLWLGSPWTCKKRRKHYQSFKRNGFKISVYDFVYVLAEEGKRLVAYLEDMYEDSRGNRMVVVRWFHKIDEVGIDLPHDFCDREVFFSLYLQDLSIECIDGLATVLSPQHYERLRTFARYTRWEPFVCRKQFDNDDVKPFDVTQLKGYWKQDIVRFMCAPSESKSHGSSGLSDNSQGNSDPAAESRPKKRRRLTKVGSKEVADLAVIKLDMSNTRPNTKIGTGKTPVKNVSDNYLVVGSQVEVLSQDSGIRGCWFRASILKMHKNKVKVQYQDILDAADETKKLEEWVLASRILAHDDLRLRKYGRNKIRPVPPHHRFEKSVRVDIGSIVDAWWHDGWWEGIVVEIVSEAKYRVYFPGEKKVSMFDLVNLRQSQEWIGNEWVKMRGRPDLVDSVLSTLKAKQGPCKSSELSTGDVIQSKEADAACLDSERDKTRKPELFPDLLKDDSLSQLRWSSRKRRRSDKDRRKSPNSLESDDASDNFVIPAFVNVEHDDFKYGGDPSVFNSSVVPSLTTNLVMCR 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241780g00002 636 ProSiteProfiles BAH domain profile. 143 260 IPR001025 GO:0003682
Stsc241780g00002 636 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 257 582 - -
Stsc241780g00002 636 MobiDBLite consensus disorder prediction 571 593 - -
Stsc241780g00002 636 MobiDBLite consensus disorder prediction 281 299 - -
Stsc241780g00002 636 SMART BAH_4 143 260 IPR001025 GO:0003682
Stsc241780g00002 636 SMART agenet_At_2 350 418 IPR014002 -
Stsc241780g00002 636 SMART agenet_At_2 439 495 IPR014002 -
Stsc241780g00002 636 MobiDBLite consensus disorder prediction 281 314 - -
Stsc241780g00002 636 Pfam Agenet domain 355 431 IPR008395 -
Stsc241780g00002 636 CDD Tudor_Agenet_AtDUF_rpt1_3 352 431 - -
Stsc241780g00002 636 Gene3D - 126 345 IPR043151 -
Stsc241780g00002 636 Pfam BAH domain 145 251 IPR001025 GO:0003682
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241780g00002 Stsc-Chr241780 4391 7905 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241780g00002 362 493 PHD Transcription Factor Family AT5G58610 30.147 1.30e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241780g00002 - - gmx:100306709 719.153