Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241780g00001 ATGATTTTGGATAATCAATTGGGGAAGCTGGGCCATGGTACAAAAGAATTCCTATGGTTAGGGTCTCCTTGGACTTGCAAGAAAAGAAGAAAGCACTATCAGTCATTTAAGCGAAACGGTTTTAAGATATCTGTTTATGATTTTGTATATGTTTTAGCAGAAGAAGGCAAACGCCTCGTTGCCTACTTGGAAGACATGTATGAGGATTCCAGAGGCAACAGGATGGTTGTGGTACGATGGTTTCACAAAATTGATGAGGTTGGTATCGATTTACCTCATGATTTTTGTGACCGAGAGGTTTTCTTTTCTCTTTATCTTCAAGATCTGAGTATTGAATGCATAGATGGATTGGCTACTGTCCTTAGTCCACAACATTACGAAAGGCTTCGGACTTTTGCGAGATATACTCGCTGGGAACCATTCGTATGCAGAAAACAATTTGATAACGATGATGTCAAACCCTTCGATGTAACCCAACTTAAGGGATACTGGAAACAAGATATAGTCAGATTCATGTGTGCCCCTTCTGAGTCGAAGTCTCATGGGAGCTCTGGTCTGTCTGACAATAGCCAAGGAAACTCCGATCCAGCTGCTGAGAGTAGACCTAAGAAGAGGCGACGCCTGACAAAAGTTGGTAGCAAAGAAGTGGCTGATTTGGCTGTTATTAAACTAGATATGAGTAATACTAGACCCAATACCAAAATTGGAACTGGAAAGACTCCGGTGAAGAATGTTTCTGATAACTATTTAGTTGTAGGTTCCCAAGTTGAGGTTCTCTCACAGGACAGTGGAATTAGAGGCTGTTGGTTCAGAGCCTCTATTCTTAAGATGCACAAAAATAAAGTGAAGGTTCAATATCAAGACATTCTGGATGCAGCTGATGAAACTAAGAAGCTGGAGGAATGGGTTCTGGCTTCCAGAATCTTAGCTCATGATGATCTGAGGCTACGGAAGTATGGAAGGAATAAGATTCGACCAGTCCCACCACATCATAGATTTGAAAAATCAGTTAGGGTTGATATTGGTTCTATCGTTGACGCTTGGTGGCATGATGGTTGGTGGGAAGGCATTGTTGTTGAAATCGTGTCTGAAGCTAAATATCGTGTTTATTTCCCAGGGGAAAAGAAGGTGTCGATGTTTGACCTTGTTAACTTACGACAATCTCAAGAATGGATAGGCAATGAATGGGTGAAGATGAGGGGTAGGCCTGACCTTGTGGATTCTGTATTGTCAACCTTAAAGGCTAAACAAGGTCCCTGCAAATCAAGTGAATTATCGACAGGAGATGTCATACAATCAAAGGAGGCTGATGCTGCATGCTTGGATTCTGAAAGGGATAAAACTAGGAAGCCTGAGTTGTTTCCAGACCTCTTGAAAGATGATTCACTATCTCAATTACGGTGGTCATCTAGGAAGAGGAGACGGAGTGATAAAGATAGGAGAAAGTCCCCAAACTCTCTGGAATCTGATGATGCTTCTGACAATTTTGTGATTCCAGCATTTGTGAATGTTGAACATGATGACTTCAAGTATGGAGGGGATCCTTCTGTTTTCAACTCTTCGGTTGTCCCTTCTTTAACAACTAACTTAGTTATGTGTAGGTAA 1605 0.415 MILDNQLGKLGHGTKEFLWLGSPWTCKKRRKHYQSFKRNGFKISVYDFVYVLAEEGKRLVAYLEDMYEDSRGNRMVVVRWFHKIDEVGIDLPHDFCDREVFFSLYLQDLSIECIDGLATVLSPQHYERLRTFARYTRWEPFVCRKQFDNDDVKPFDVTQLKGYWKQDIVRFMCAPSESKSHGSSGLSDNSQGNSDPAAESRPKKRRRLTKVGSKEVADLAVIKLDMSNTRPNTKIGTGKTPVKNVSDNYLVVGSQVEVLSQDSGIRGCWFRASILKMHKNKVKVQYQDILDAADETKKLEEWVLASRILAHDDLRLRKYGRNKIRPVPPHHRFEKSVRVDIGSIVDAWWHDGWWEGIVVEIVSEAKYRVYFPGEKKVSMFDLVNLRQSQEWIGNEWVKMRGRPDLVDSVLSTLKAKQGPCKSSELSTGDVIQSKEADAACLDSERDKTRKPELFPDLLKDDSLSQLRWSSRKRRRSDKDRRKSPNSLESDDASDNFVIPAFVNVEHDDFKYGGDPSVFNSSVVPSLTTNLVMCR 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241780g00001 534 MobiDBLite consensus disorder prediction 179 212 - -
Stsc241780g00001 534 Gene3D - 24 244 IPR043151 -
Stsc241780g00001 534 ProSiteProfiles BAH domain profile. 41 158 IPR001025 GO:0003682
Stsc241780g00001 534 Pfam Agenet domain 253 329 IPR008395 -
Stsc241780g00001 534 MobiDBLite consensus disorder prediction 179 197 - -
Stsc241780g00001 534 SMART agenet_At_2 248 316 IPR014002 -
Stsc241780g00001 534 SMART agenet_At_2 337 393 IPR014002 -
Stsc241780g00001 534 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 155 480 - -
Stsc241780g00001 534 Pfam BAH domain 43 149 IPR001025 GO:0003682
Stsc241780g00001 534 SMART BAH_4 41 158 IPR001025 GO:0003682
Stsc241780g00001 534 MobiDBLite consensus disorder prediction 469 491 - -
Stsc241780g00001 534 CDD Tudor_Agenet_AtDUF_rpt1_3 250 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241780g00001 Stsc-Chr241780 4391 7905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241780g00001 260 391 PHD Transcription Factor Family AT5G58610 30.147 1.29e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241780g00001 - - gmx:100817358 632.098