Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241779g00009 ATGGATACTACTACTACCAAGAAATCCCCCTTGAAGCCATGGAAGAAGGGTCCAACTAGAGGGAAAGGTGGCCCCCAGAACGCTTCGTGCGAGTATCGAGGTGTTCGCCAAAGAACTTGGGGCAAATGGGTTGCTGAGATCAGAGAGCCAAAGAAGAGGACCAGGCTCTGGCTTGGTTCTTTTGCCACGGCCGAAGAAGCCGCCATGGCTTATGACGAGGCTGCTCGGAGGCTCTATGGACCGGATGCGTATCTTAACCTTCCCCACCTAAAACCGAGCTCGAACTTTCCCATCAAATCTGGGAAATTCAAATGGATGCCATCCAAGAACTTCATTTCAATGTTCCCTTCTTGTGGATTACTCAATGTGAATGCTCAACCTAGTGTTCATTTAATCCATCAGAGGCTACAGCAGTTTAAGAAGAGTGGGGTTCTGAATCAATCTCCTAGTTCATCCAATGATCCAAAGACTGAAATTCAGAATGTAAAAGAAAGCAAAGCTCAGGCAGAAGAAGATCCTCTGGAGGATAAAAACACTCGGGCATCATCGGAGGCAATGCTTGGAGATCTTCATGAGAAGCCACAGATAGACCTTCATGAGTTTCTTCAGCAGATGGGAATACTGAAAGCAGAAATACAGGAAGAAAGAACTGATAGCTCAGGGAGTTCAACAATGCCTGAAGCTACGTCGTGTGATAACTATGATCAACTAGGCCTGTTTTCTGACAACAGTGTTAACTGGGAAGAACTGATTGGGATGCATGGAATTGCAGATTTTCAGGAATCTGAATCCACCCAGTTCGAAGCATATGAAACAAATGATGAGCAAAATTTCTATTCTTCTATCTGGAACTTCTAA 858 0.4499 MDTTTTKKSPLKPWKKGPTRGKGGPQNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDEAARRLYGPDAYLNLPHLKPSSNFPIKSGKFKWMPSKNFISMFPSCGLLNVNAQPSVHLIHQRLQQFKKSGVLNQSPSSSNDPKTEIQNVKESKAQAEEDPLEDKNTRASSEAMLGDLHEKPQIDLHEFLQQMGILKAEIQEERTDSSGSSTMPEATSCDNYDQLGLFSDNSVNWEELIGMHGIADFQESESTQFEAYETNDEQNFYSSIWNF 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241779g00009 285 MobiDBLite consensus disorder prediction 142 158 - -
Stsc241779g00009 285 MobiDBLite consensus disorder prediction 159 179 - -
Stsc241779g00009 285 ProSiteProfiles AP2/ERF domain profile. 31 88 IPR001471 GO:0003700|GO:0006355
Stsc241779g00009 285 PRINTS Ethylene responsive element binding protein signature 32 43 IPR001471 GO:0003700|GO:0006355
Stsc241779g00009 285 PRINTS Ethylene responsive element binding protein signature 54 70 IPR001471 GO:0003700|GO:0006355
Stsc241779g00009 285 Gene3D AP2/ERF domain 31 89 IPR036955 GO:0003700|GO:0006355
Stsc241779g00009 285 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 5 251 - -
Stsc241779g00009 285 SMART rav1_2 31 94 IPR001471 GO:0003700|GO:0006355
Stsc241779g00009 285 SUPERFAMILY DNA-binding domain 31 89 IPR016177 GO:0003677
Stsc241779g00009 285 Pfam AP2 domain 30 80 IPR001471 GO:0003700|GO:0006355
Stsc241779g00009 285 MobiDBLite consensus disorder prediction 142 180 - -
Stsc241779g00009 285 CDD AP2 30 90 IPR001471 GO:0003700|GO:0006355
Stsc241779g00009 285 FunFam Ethylene-responsive transcription factor 2 30 89 - -
Stsc241779g00009 285 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241779g00009 Stsc-Chr241779 81431 82300 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241779g00009 7 285 AP2-EREBP Transcription Factor Family AT3G57600 51.590 1.17e-86 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc241779g00009 AP2 1.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241779g00009 - - gmx:100801311 429.098