Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241779g00006 ATGAATCACTTGACTGTTGAGACTGAAGATTCTTTTGCAGGCTTACTTGAGCTTGCAGCCAATAACGATGTGGATGGTTTCAAACGAATGATTGAGTGTGATCCTGCCTCTGTGGACGAGGTTGGACTGTGGTATGGCCGTCGGAAGGGATCAAAGCAGATGGTCAATGAGCAAAGAACACCTTTGATGGTTGCTGCTACCTATGGTAGCGTCGATGTTATGAGAATGATTCTTTCACTCTCTGAAGCTGATATCAACCGGCCTTGTGGTGCTGACAAGAGCACTGCTCTTCATTGTGCAGCATCCGGTGGGTCTGAAAATGCTGTGGATGCTGTAAAGCTGCTTCTTGCAGCGGGTGCTGATCCAAGTGCTGTGGATTCCAATGGACACCGTCCCATAGATGTTATTGTTTCTCCTCCTAAGCTTGAATGTGTCAAAAACAGTCTTGAAGAACTTCTTCAAACTGATGATTCTATTACAGGGTGTAATTTGAGGGTGATCACAACCACATTTAATTCATATTCTCCACCTTTGTCAACTTCACCTGAGAATGGGTCCCCTTCTGCCCCAGATTTCCAATTGAAGTTGAAGTCCAGTGATGTCCCTGCATCTTCTGTGTCTGAGAAGAAAGAATACCCAGTTGATCCATCCCTTCCAGACATTAAGAACAGCATTTATTCAACTGATGAGTTCCGAATGTATTCTTTCAAGGTTCGACCTTGTTCACGAGCTTATTCCCATGATTGGACTGAATGCCCTTTTGTGCATCCGGGGGAGAATGCTCGGAGAAGGGACCCAAGGAAGTACCACTATAGTTGTGTCCCCTGTCCTGATTTTCGAAAGGGTGCTTGCCGGCGAGGAGATATGTGTGAATATGCTCATGGGGTTTTTGAGTGCTGGCTTCATCCAGCACAATACAGAACTCGTCTTTGCAAGGATGGGACAAGTTGTTCCAGACGAGTTTGCTTCTTTGCCCACACTACTGAAGAGCTTCGGCCCTTATATGTTTCAACTGGTTCTGCAGTTCCCTCTCCTCGTTCAAGCACATCTTCGGCCATGGATTTCGCTGCAGCCATGAGCATGTTGCCTGGATCTCCTTCTTCGATGTCTGTCATGTCTCCTTCACCATTCACTCCACCAATGTCACCTTCTGCAAATGGCATGTCCCATTCCTCTGTTGCTTGGCCACAGCCAAATGTTCCAGCCTTGCATCTACCAGGAAGTAATCTTCAGTCTAGTCGTCTGAGATCTTCACTCAATGCTAGAGATATCCCTATGGATGAGTTTGACATGTTGTCTGATTATGATCAGCAGCAGCAGCTCATGAATGAGTTGTCTTGCCTCTCCCCGCAGCCTATGAATTCTAATTCACTAAATCGCTCTGGTCGCATGAAGCCGCTGACTCCTTCAAATCTTGATGATCTTTTTTCTGCTGAGAGTTCGTCTCCTCGATTTGCTGATCCAACTCTGACATCAACTGTCTTTTCTCCAACTCACAAATCAGCCGTCTTCAATCAATTTCAGCAGCAGCAAAGCCTGTTGTCACCTATTAATACAAATTTCTCGTCTAAAGGTGTTGAGCATCCTTTATTGCAGGCCTCTTTTGGGGTTCAGCCATCGGGAAGAATGTCTCCACGAACCGTCGAACCTATTTCTCCAATGAGTTCTAGGCTTTCTATGCTTGCTCAACGCGAGAAGCAGCAACAGTTTCGCAGTCTTAGCTCCCGGGAACTTGGCTCCAACTCTGCTTCTGCAGCAGCTGCAGCTGCTTCTGTCAATTCTTGGTCAAAATGGGGATCTCCCAATGGTAAGTTGGATTGGGNNNNNNNNNNAGTAGGTGCTGATGAACCAGGTGGTGGTGGTAAGCTTCGTCGATCTTCCTCATTTGAGCTCGGCAACAACGGTGAGGAGCCTGATTTGTCATGGGTGCAGTCACTTGTGAAGGAATCTCCAACCGAGATCAAAGAGAAGTTAACAGCTAATGTCTCAAGTGCTGCAGCTGCTGGATCCTTGAATGAAGGATCCAATTTGGGCACACAAATGGAGTCTATTGATCATGCCGTATTGGGAGCATGGCTCGAACAGATGCAGCTTGACCATCTTGTGGCCCAGCAAAATTAA 2121 0.4644 MNHLTVETEDSFAGLLELAANNDVDGFKRMIECDPASVDEVGLWYGRRKGSKQMVNEQRTPLMVAATYGSVDVMRMILSLSEADINRPCGADKSTALHCAASGGSENAVDAVKLLLAAGADPSAVDSNGHRPIDVIVSPPKLECVKNSLEELLQTDDSITGCNLRVITTTFNSYSPPLSTSPENGSPSAPDFQLKLKSSDVPASSVSEKKEYPVDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCSRRVCFFAHTTEELRPLYVSTGSAVPSPRSSTSSAMDFAAAMSMLPGSPSSMSVMSPSPFTPPMSPSANGMSHSSVAWPQPNVPALHLPGSNLQSSRLRSSLNARDIPMDEFDMLSDYDQQQQLMNELSCLSPQPMNSNSLNRSGRMKPLTPSNLDDLFSAESSSPRFADPTLTSTVFSPTHKSAVFNQFQQQQSLLSPINTNFSSKGVEHPLLQASFGVQPSGRMSPRTVEPISPMSSRLSMLAQREKQQQFRSLSSRELGSNSASAAAAAASVNSWSKWGSPNGKLDWXXXXVGADEPGGGGKLRRSSSFELGNNGEEPDLSWVQSLVKESPTEIKEKLTANVSSAAAAGSLNEGSNLGTQMESIDHAVLGAWLEQMQLDHLVAQQN 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241779g00006 706 PANTHER UNKEMPT FAMILY MEMBER 17 650 IPR045234 -
Stsc241779g00006 706 MobiDBLite consensus disorder prediction 447 466 - -
Stsc241779g00006 706 MobiDBLite consensus disorder prediction 607 635 - -
Stsc241779g00006 706 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 275 295 IPR000571 GO:0046872
Stsc241779g00006 706 MobiDBLite consensus disorder prediction 536 562 - -
Stsc241779g00006 706 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Stsc241779g00006 706 ProSiteProfiles Zinc finger C3H1-type profile. 275 297 IPR000571 GO:0046872
Stsc241779g00006 706 MobiDBLite consensus disorder prediction 447 480 - -
Stsc241779g00006 706 FunFam Zinc finger CCCH domain-containing protein 66 228 296 - -
Stsc241779g00006 706 Gene3D - 270 333 - -
Stsc241779g00006 706 MobiDBLite consensus disorder prediction 175 194 - -
Stsc241779g00006 706 MobiDBLite consensus disorder prediction 371 393 - -
Stsc241779g00006 706 SUPERFAMILY Ankyrin repeat 7 146 IPR036770 -
Stsc241779g00006 706 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Stsc241779g00006 706 Pfam Ankyrin repeats (3 copies) 20 125 IPR002110 GO:0005515
Stsc241779g00006 706 SMART c3hfinal6 270 296 IPR000571 GO:0046872
Stsc241779g00006 706 SMART c3hfinal6 305 328 IPR000571 GO:0046872
Stsc241779g00006 706 SMART ANK_2a 57 87 IPR002110 GO:0005515
Stsc241779g00006 706 SMART ANK_2a 92 124 IPR002110 GO:0005515
Stsc241779g00006 706 Gene3D - 9 152 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241779g00006 Stsc-Chr241779 58365 62372 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241779g00006 6 699 C2H2 Transcription Factor Family AT5G12850 53.081 0.0 678
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc241779g00006 Ank_2 3.1e-09 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241779g00006 - - ccaj:109796653 1156.74