Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241779g00005 ATGCTTGAACAGAAGTGTTACCTTAGGTCACCATTATTGCTATGTGTTTTCATCTGCTTCTTGCTGTATCCTGCTGTGAGGGCTGAGATACCACTGGGTTCAAAACTTTCTGTGGTTGACAATGGCAGCTGGGTTTCAAAAAATGGAAACTTTGCAATTGGGTTCTTTAACATTTCTGATGAACCTAACCAGTATAGTGTTGGCATTCGTTTCAACGACGAGTCTATACCATATAGCCAACAAACAGTGGTGTGGACTGCTGGATTTCAGATTGTAGTAGGTAACATGTCCTATTTCCAATTCACCACAAATGGTGAAATGGTTCTGTTTGATGATGAGGGAATGTCTCTATGGAACAGCAACACCAGTAACAAGGGTGTCGCGTCGGCTTCTCTTCTTGATAATGGCAATCTTGTTCTGATGGACAGAGAGCAAAAGGTCATTTGGCAAAGTTTTGATGATCCAGGCAATACACTTCTCCCAGGACAGTATCTCTCTTGTGATAGTATGCTTCGTGCTGCGACTAAGGATCTAGTGTCAAGTTACTACAGTCTTTCAATGAATGTTTCAGGACACTTGATGCTTCGCTGGGAAAGTAATATTCCCTACTGGACAAGCGAAAGCCCTTCCGTTTCGAATCTCACTGCATATCTTACAAACAATGGAGCTCTACAACTTCTAGACAAAAGTTCTTCTAATGTTGTTTGGAGTGTGTTTGGAGATGACCACAATGAATCTGTTAACTACCGGTTTCTTAGGATAGATGTGGATGGGAATCTTCGCCTATATTCGTGGGTGGAGGCTTCACAATCATGGAGATCTGTCTGGCAAGCTGTTGAGAATCAGTGCAAGGTTTTCGCCACTTGTGGTAAACATGGGGTCTGTGTTTTGTCTCCCTCAGGCACGGCTGATTGTGTGTGCCCTTTCGAGCAGACCGACACTGGGACCTGTTTGGTTCCATATGAACAAAAGTGTGAACCTGGCTCCACTATGATGACATATTCGAACACACACCTATATGGAATTTACCCCGTCGATGGCCCAGTTATCATAAGTAGTCTGCATCAATGTATGCAAATATGCCAGAATGACTCAAGGTGTACCGTCGCAACCTTTTCCAACGATGGTGTTCCCCAATGCTCAATAAAGAAATCTGAATATATCACTGGCTATTCAGATCCATCTCTAAGCTCAGTGTCATTTGTTAAGAGATGTTCATTACCATTTGCTGTAAATCCCACACTTGGAAGCTCACCTCCAACAAAACGAGCTCCTAACTTTTGTGTTCCTTGTCTAATTGGAGCAGCCTCAGGCACATGTTTCATTGTTGTTATCCTTCAACTTGGATTTATTTTTTGGATCTATAGAAGAAGAAACTCTACTAGGAGGAAAGACAATTTAGCCTCGGCAGGCGCAAATTCAAAGGGCCTAGTTGCGTTATCTTTTTCAGAGATCAAGAGCCTCACTGAGAATTTCAAGGATCAAATTAGGCCAAATATGTTCAAGGGCATGCTACCAAACAAATTCCCAGTTGCAATTAAAGAGCTGAATGCATCCATAGATGAAAGGAAGTTCCGGAGTGCTGTTCTGAAGATTGGAAGCATCCACCACAGGAACCTTGTGAAGCTGGAGGGCTATTGTTGTGAGTTCAATCATAGATTCTTGGTCTACGAATATTCTAAAAATGGTTCTCTCGACAAGTATATAGACGATTCCACTCTTTGCAAGAAACTGACATGGAGAAAAAGAGTTGACATCTGCTCAAGTGTGGCCAAGGCCATCAATTATCTTCACTCTGAATGCAGGGAGTTTATAAGCCACGGAAACCTGAAGTGCGAAAATGTCATGTTAGATGGGAACTTAGAAGCCAAGGTGAGTGAAGCTGGGTTTGCGATAGTAGATGGCGAGGCAGTGTACTGTGGCGTTTCGGCCGAGAGGGACATAGCAGATTTCGGCAAGTTAGTCCTAACCTTGTTGACCGGATGTAGAGATCACATAGATCTTTGTGAGTGGTCATATAAAGAATGGATAGAAGGGAATGCTGCAAATGTGATTGATAAAAGAATTGAAGGTGGTGCCAATTCAAATGAACTTGAAAGGATCTTGAGAATTGCATTCTGGTGCCTACAAGGCGATGAACGTCGAAGACCTTCAATGGTGGAGGTAGTGAGAGTACTAGATGGAACATTGAGTGTTGATCCAGCACCACCTCCATTTTCATGCCACAGGCCATTGCTGGAAGAATCTGAGACACAACAAGATAATGTTTCAGAATCTGAGATTCAGTAG 2289 0.4281 MLEQKCYLRSPLLLCVFICFLLYPAVRAEIPLGSKLSVVDNGSWVSKNGNFAIGFFNISDEPNQYSVGIRFNDESIPYSQQTVVWTAGFQIVVGNMSYFQFTTNGEMVLFDDEGMSLWNSNTSNKGVASASLLDNGNLVLMDREQKVIWQSFDDPGNTLLPGQYLSCDSMLRAATKDLVSSYYSLSMNVSGHLMLRWESNIPYWTSESPSVSNLTAYLTNNGALQLLDKSSSNVVWSVFGDDHNESVNYRFLRIDVDGNLRLYSWVEASQSWRSVWQAVENQCKVFATCGKHGVCVLSPSGTADCVCPFEQTDTGTCLVPYEQKCEPGSTMMTYSNTHLYGIYPVDGPVIISSLHQCMQICQNDSRCTVATFSNDGVPQCSIKKSEYITGYSDPSLSSVSFVKRCSLPFAVNPTLGSSPPTKRAPNFCVPCLIGAASGTCFIVVILQLGFIFWIYRRRNSTRRKDNLASAGANSKGLVALSFSEIKSLTENFKDQIRPNMFKGMLPNKFPVAIKELNASIDERKFRSAVLKIGSIHHRNLVKLEGYCCEFNHRFLVYEYSKNGSLDKYIDDSTLCKKLTWRKRVDICSSVAKAINYLHSECREFISHGNLKCENVMLDGNLEAKVSEAGFAIVDGEAVYCGVSAERDIADFGKLVLTLLTGCRDHIDLCEWSYKEWIEGNAANVIDKRIEGGANSNELERILRIAFWCLQGDERRRPSMVEVVRVLDGTLSVDPAPPPFSCHRPLLEESETQQDNVSESEIQ 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241779g00005 762 ProSiteProfiles PAN/Apple domain profile. 325 405 IPR003609 -
Stsc241779g00005 762 SUPERFAMILY alpha-D-mannose-specific plant lectins 79 206 IPR036426 -
Stsc241779g00005 762 Gene3D Transferase(Phosphotransferase) domain 1 561 636 - -
Stsc241779g00005 762 PANTHER OS07G0415500 PROTEIN 12 739 - -
Stsc241779g00005 762 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 639 734 - -
Stsc241779g00005 762 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 456 559 - -
Stsc241779g00005 762 Gene3D - 154 279 IPR036426 -
Stsc241779g00005 762 Gene3D Hepatocyte Growth Factor 332 407 - -
Stsc241779g00005 762 Pfam S-locus glycoprotein domain 230 310 IPR000858 GO:0048544
Stsc241779g00005 762 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 26 154 - -
Stsc241779g00005 762 Gene3D Transferase(Phosphotransferase) domain 1 637 736 - -
Stsc241779g00005 762 ProSiteProfiles Bulb-type lectin domain profile. 29 153 IPR001480 -
Stsc241779g00005 762 MobiDBLite consensus disorder prediction 736 762 - -
Stsc241779g00005 762 SMART ntp_6 326 404 IPR003609 -
Stsc241779g00005 762 ProSiteProfiles Protein kinase domain profile. 464 730 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241779g00005 762 PIRSF SRK 3 638 IPR024171 GO:0004674
Stsc241779g00005 762 PIRSF SRK 636 762 IPR024171 GO:0004674
Stsc241779g00005 762 Gene3D - 26 153 IPR036426 -
Stsc241779g00005 762 CDD B_lectin 36 155 IPR001480 -
Stsc241779g00005 762 SMART blect_4 35 155 IPR001480 -
Stsc241779g00005 762 Pfam D-mannose binding lectin 82 170 IPR001480 -
Stsc241779g00005 762 SUPERFAMILY alpha-D-mannose-specific plant lectins 173 274 IPR036426 -
Stsc241779g00005 762 Pfam Protein tyrosine and serine/threonine kinase 507 631 IPR001245 GO:0004672|GO:0006468
Stsc241779g00005 762 Gene3D Phosphorylase Kinase; domain 1 454 559 - -
Stsc241779g00005 762 SUPERFAMILY Protein kinase-like (PK-like) 501 726 IPR011009 -
Stsc241779g00005 762 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 560 638 - -
Stsc241779g00005 762 ProSiteProfiles Bulb-type lectin domain profile. 156 275 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241779g00005 Stsc-Chr241779 42440 45011 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241779g00005 421 736 Receptor kinase-like Gene Family AT4G05200 28.767 2.40e-40 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Stsc241779g00005 PK_Tyr_Ser-Thr 7.6e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241779g00005 - - gmx:100815678 1095.49