Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241779g00002 ATGGGTAACTGCTGTGCGACGCCGTCGACTCTTCACGATGGCGAGAAGCCAAACAAAGGGAAGAAGAAGAAGGAGAAGCAGAACCCCTTCGCAGTGGACTACGGGAACGGAAACGACGTCGTTCGAGGCTCGAAGCTCGTCGTCTTGAAGGACCCAACGGGTCGCGAGATCTCGCAGCGTTACGAGCTCGGTGGCGAGCTGGGTCGCGGCGAGTTTGGAGTCACGTACCTTTGTACGGACAAGGAGACGCGCGAGGATTACGCGTGCAAATCGATCTCGAAGAAGAAGCTGAGAACCGCCATAGACATCGAGGATGTGAGGAGAGAGGTTGAGATCATGAGGCACCTTCCAAAACACCCTAACATCGTTTCTTTGAAGGATACTTACGAAGATGATAGTGCGGTTCATCTTGTTATGGAGCTCTGTGAGGGTGGTGAGTTGTTTGACCGTATCGTTGCCAGGGGCCATTACACCGAGAGAGCTGCTGCTGCTGTTACCAAAACCATCGTTGAAGTTGTTCAGATGTGCCACAAACATGGCGTGATGCACCGTGATCTCAAACCCGAGAACTTTCTTTTCGCAAATAAGAAGGAAACTGCTGCTCTCAAGGCTATTGATTTTGGATTGTCGGTGTTCTTTAAACCAGGGGAAAGGTTTAATGAGATTGTTGGAAGTCCATATTACATGGCTCCGGAGGTGCTAAAGAGAAATTATGGTCCAGAAGTAGATATTTGGAGTGCTGGAGTAATTCTATACATCTTACTTTGTGGTGTCCCACCATTTTGGGCAGAAACTGAACAAGGAGTTGCACAAGCAATTATACGATCTGTGGTTGATTTTAAAAGAGAACCGTGGCCAAAAGTTTCTGATAATGCAAAAGACCTTGTGAAGAAGATGCTTGATCCTGACCCTAAGCGTCGCCTTACTGCAGAGGAAGTGTTGGATCATCCCTGGTTGCAAAATGCAAAGAAGGCCCCTAATGTTTCACTAGGAGAAACTGTTAGAGCAAGGCTCATGCAATTTTCTGTAATGAACAAGCTTAAGAAGAGAGCTTTGAGGGTGATTGCAGAGCATTTGTCAGTCGAAGAAGCAGCCGGAATAAAAGAGGGATTCCAGCTCATGGATATAACCAACCGAGGCAAAATTAACATTGATGAACTACGAGTAGGGTTGCATAAGCTTGGCCATCAAGTTCCAGAGACAGATCTCCAAATTATTATGGAAGCTGGTGATGTAGATAAGGATGGATTCCTAGATTATGGAGAGTTTGTAGCCATTTCTGTTCACCTGAGAAAGATGGGAAACGACGAGCACCTTCGCAAAGCCTTCCAGTTTTTCGATCAGAACCAAAATGGATACATTGAAATGGAAGAGCTGCGTAGCGCCTTGCATGATGAGGTTGACGCAAACAGTGAAGAAGTCATAAGTGCAATTATGCATGATGTGGACACAGATAAGGATGGAAGAATAAGTTATGAAGAATTTGCTGCGATGATGAAGGCCGGCACGGATTGGAGAAAAGCATCAAGGCAGTATTCGCGGGAGAGATTCACAAGTCTGAGTCTGAAATTGATGAAGGATGGCTCATTGTCGTTAAACAATGAGGATAATAATAGATAA 1620 0.4586 MGNCCATPSTLHDGEKPNKGKKKKEKQNPFAVDYGNGNDVVRGSKLVVLKDPTGREISQRYELGGELGRGEFGVTYLCTDKETREDYACKSISKKKLRTAIDIEDVRREVEIMRHLPKHPNIVSLKDTYEDDSAVHLVMELCEGGELFDRIVARGHYTERAAAAVTKTIVEVVQMCHKHGVMHRDLKPENFLFANKKETAALKAIDFGLSVFFKPGERFNEIVGSPYYMAPEVLKRNYGPEVDIWSAGVILYILLCGVPPFWAETEQGVAQAIIRSVVDFKREPWPKVSDNAKDLVKKMLDPDPKRRLTAEEVLDHPWLQNAKKAPNVSLGETVRARLMQFSVMNKLKKRALRVIAEHLSVEEAAGIKEGFQLMDITNRGKINIDELRVGLHKLGHQVPETDLQIIMEAGDVDKDGFLDYGEFVAISVHLRKMGNDEHLRKAFQFFDQNQNGYIEMEELRSALHDEVDANSEEVISAIMHDVDTDKDGRISYEEFAAMMKAGTDWRKASRQYSRERFTSLSLKLMKDGSLSLNNEDNNR 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241779g00002 539 ProSitePatterns Protein kinases ATP-binding region signature. 67 90 IPR017441 GO:0005524
Stsc241779g00002 539 Pfam EF-hand domain pair 380 428 IPR002048 GO:0005509
Stsc241779g00002 539 PANTHER SERINE/THREONINE-PROTEIN KINASE 56 495 - -
Stsc241779g00002 539 ProSiteProfiles EF-hand calcium-binding domain profile. 470 505 IPR002048 GO:0005509
Stsc241779g00002 539 SUPERFAMILY Protein kinase-like (PK-like) 46 335 IPR011009 -
Stsc241779g00002 539 ProSitePatterns EF-hand calcium-binding domain. 447 459 IPR018247 -
Stsc241779g00002 539 Gene3D Transferase(Phosphotransferase) domain 1 147 327 - -
Stsc241779g00002 539 FunFam Calcium-dependent protein kinase 1 63 146 - -
Stsc241779g00002 539 CDD EFh 438 500 IPR002048 GO:0005509
Stsc241779g00002 539 ProSiteProfiles EF-hand calcium-binding domain profile. 398 433 IPR002048 GO:0005509
Stsc241779g00002 539 Gene3D Phosphorylase Kinase; domain 1 64 146 - -
Stsc241779g00002 539 ProSiteProfiles EF-hand calcium-binding domain profile. 362 397 IPR002048 GO:0005509
Stsc241779g00002 539 ProSiteProfiles Protein kinase domain profile. 61 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241779g00002 539 FunFam Calcium-dependent protein kinase 7 328 503 - -
Stsc241779g00002 539 MobiDBLite consensus disorder prediction 14 29 - -
Stsc241779g00002 539 Gene3D - 328 502 - -
Stsc241779g00002 539 ProSitePatterns EF-hand calcium-binding domain. 483 495 IPR018247 -
Stsc241779g00002 539 CDD STKc_CAMK 60 318 - -
Stsc241779g00002 539 Pfam EF-hand domain pair 437 500 IPR002048 GO:0005509
Stsc241779g00002 539 SUPERFAMILY EF-hand 343 512 IPR011992 -
Stsc241779g00002 539 ProSiteProfiles EF-hand calcium-binding domain profile. 434 469 IPR002048 GO:0005509
Stsc241779g00002 539 FunFam calcium-dependent protein kinase 13 147 327 - -
Stsc241779g00002 539 SMART serkin_6 61 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241779g00002 539 SMART efh_1 474 502 IPR002048 GO:0005509
Stsc241779g00002 539 SMART efh_1 366 394 IPR002048 GO:0005509
Stsc241779g00002 539 SMART efh_1 402 430 IPR002048 GO:0005509
Stsc241779g00002 539 SMART efh_1 438 466 IPR002048 GO:0005509
Stsc241779g00002 539 Pfam Protein kinase domain 61 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241779g00002 539 ProSitePatterns EF-hand calcium-binding domain. 411 423 IPR018247 -
Stsc241779g00002 539 ProSitePatterns Serine/Threonine protein kinases active-site signature. 181 193 IPR008271 GO:0004672|GO:0006468
Stsc241779g00002 539 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241779g00002 Stsc-Chr241779 8366 12377 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241779g00002 1 536 EF-hand Containing Proteins AT5G19450 79.143 0.0 890
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Stsc241779g00002 Pkinase 3e-78 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241779g00002 K13412 - gmx:100790745 938.332