Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241778g00010 ATGGAGGATGGAAAGCATAAATCAAGGAGAGAAGATTCTGAAGTGAAGGAAGATGATTCCAAGAGGAGCCACCGTGACAGGGGCGGGGAAAAGGATAAGGATAGAAGCAATGGGAAGCATAGGGATAGGGAGAAGCGGAACCGCGACCGCGACCGTGACAGCAGGAGGCATGATAGAGATCATAGTAGTGATGATTCTGATGACAAGTATGATAGGGAGAAGGAGAAGGAGAAGCGCAGAGATAAAGACAAGGAAGAAAGACGGGCTCGTGAGAAGAAAAGAGAAAGGGAAAAGGAGAAGGAAAGGGAAAGGGAAAGGGAAGATAAGGAGAGGGAAAGGAGAGAAAGGGCCAAGGAGAAAGAAAGAGAGAGGGAAAGAGAAAGAGAAAGAGAAAGGAGGGAGAGGGAACGTGAGCGAGAAAAGGATAAGGATAGGAGGGAGCGTGAGAGAGATAAAGAAATTGAAAGAGAAAGGGGGAGGAGAGTGCGTGACAGGGAGAAGCGCAGGGAAGTGGATAGTGATTATAGTGATGATGATTCCAGGGAGAGGGAGAGAGATAGGAAGCGGCACAAAAAAGAGGATGATGATTACAAGGGGAGAGACAAGGACAGGAGTTCTGGCAAGTCACATAAGCAAACTGAGGATGTTGAAGTTAGCCCGAGAAGAAAGAGCGGTGAAGATGACTCAGATGCCAAGGTGAAGGAGAGAAAACCTACCCATGAAGAGGAGATAGAGGAAGAACATAAGAGGCTGGATGAAGAAATGGAAAAGAGGAGGAGGAGGGTTCAGGAGTGGCAAGAGCTGAGGAGGAAGAAGGAAGAAGCTGAGAGAGAAAAACAGGGTGAAGCAAGTGCTAGTGAACCAAAGTTGGGAAAGGCCTGGACCCTTGAAGGGGAATCTGATGATGAAGAAGCAACTGGTACAGGGAAGCCAGATACTACAATGGATGTAGATGAAGATGAAAAACCTGTTGATAAAGAACCTGGGGATCCAATGGTGGCAGATGGTGATAATGGGACAGTTACATCTGATTTACAAGATGGAACTGCTGGTGCTCCTGAGGACGATGACATTGATCCACTGGATGCCTTCATGAATTCTATGGTTCTACCTGAAGTTGAAAAGCTGAATAACACTGTTTCCTCTTCAATACCTGATAAAACTAATGACAAGAAACTCAAGGATAGAGGGGATGAGCAGGGTCGTAGTGGACAGTCAAGGAAAGTTTCCAATAATAAATCTATTGGAAGAATAATTCCTGGTGAAGACTCTGATTCTGACTATTCAGATCTTCAAGTTGACGATGAAGACATTGAAGAAAATGATGAGGATTTTATGAAAAGAGTGAAGAAGTCGAAAGCCGATAAGTTGTCTATAGTTGACCATTCAAAGATTGATTATCAACCTTTCAAGAAAAATTTCTACATTGAAGTGAAGGATATCTCAAGGCTGACTCCTGAAGAAGTTGCTGCCTACCGGAAAGAGCTGGAGCTGAAGATACATGGAAAGGATGTTCCAAAGCCTGTAAAATCATGGCATCAGACTGGACTTACTAGCAAAATTTTAGAGACAATAAGAAAGCTTAACTACGAAAAGCCGATGCCTATTCAAGCTCAGGCACTGCCTGATCAGCCACCAGTTGTTACAGGAGATGGACCAATTGGGCTTATCATGGCTCCTACAAGGGAGCTTGTTCAACAGATTTACAGTGATATAAAGAAGTTTGGAAAGGTACTGGGTCTAAGATGTGTACCTGTGTACGGAGGTTCTGGTGTTGCTCAACAAATTAGTGAGTTGAAACGTGGAGCTGAGATAGTGGTTTGTACTCCAGGTAGGATGATTGACATACTATGTACCAGTGGGGGCAAAATAACTAACCTGCGCAGGGTTACTTATTTGGTCATGGATGAGGCTGATAGAATGTTTGACATGGGGTTTGAACCTCAAATCACAAGAATCGTTCAGAATATCCGGCCAGATCGTCAAACTGTTCTCTTTTCTGCCACTTTCCCTCGCCAGGTTGAAGTTCTTGCCCGCAAGTCACAGGAAAAATGTGATACTTTGTTCAAGGATTTGCTTAAGTCTGGTTATCCTTGCTTATCTCTTCATGGAGCTAAGGACCAGACAGATCGTGAATCCACAATTGCTGATTTTAAAAGCAATGTCTGCAATATGTTGATTGCTACTAGTATTGCTGCCAGGGGACTAGATGTCAAGGAGCTTGAATTGGTTATCAATTTTGATGTTCCTAACCACTATGAAGATTATGTACATCGTGTTGGCCGCACTGGCCGAGCTGGCCGAAAGGGTTGCGCTATTACTTTTATTTCGGAGGAAGAAGCAAGATATGCACCTGATTTGGCAAAAGCATTGGAGCTATCTGAGCAAGTTGTTCCTGATGACTTGAAAGCTCTTGCTGATGGCTTTATGGCCAAAGTGAAACAAGGGCTTGAGCAGGCGCATGGAACTGGTTATGGAGGCAGTGGCTTTAAATTTAATGAAGAGGAAGATGAGGAGAGGAGAGCAGCGAAGAAAGCTCAAGCCAAGGGGTATGGGTTTGAAGAGGATAAATCAGATTCTGAAGATGAAGATGAAAATATTAGGAAGTCGGGAGGTGACATCTCGCAGCTTGCTCAAATTCTTGGTGGCTCAAAAGGAACTGTTCCCGCAATACCTAACCCCATCTCTACTGCTCAGCTGATTTCTAATGGTGGACTAAATGTTCCATTGCAAGCTGTTCTTGGTAATCTCCAAACTACTACGGTTTTGCCTATTGGAGGGCTTCCCCTTACTACAAATGATGGGGCAGCTCGGGCAGCATTAGCTGCTATTAACCTGCAGCACAACTTAGCTAAGATACAGAATGAAGCATTGCCTGAGCATTATGAAGCTGAATTAGAGATTAATGATTTCCCCCAAAATGCTCGGTGGAAAGTCACACACAAGGAAACTTTGGGTCCAATTTCTGAGTGGACAGGAGCTGCTATTACCACCAGGGGACAATATTTCCCACCTGGTAAAATTGCAGGACCTGGGGAACGCAAGCTCTACTTGTTCATTGAGGGTCCTAGCGAGCAGTCTGTTAAGAGAGCTAAAGCGGAGTTGAAGTTAGTTTTGGAAGACATCACAAACCAAGCTTTGCAACTTCCTGGTGGATCTCAACCTGGGAAATACTCTGTTGTTTAA 3186 0.4435 MEDGKHKSRREDSEVKEDDSKRSHRDRGGEKDKDRSNGKHRDREKRNRDRDRDSRRHDRDHSSDDSDDKYDREKEKEKRRDKDKEERRAREKKREREKEKEREREREDKERERRERAKEKERERERERERERREREREREKDKDRRERERDKEIERERGRRVRDREKRREVDSDYSDDDSRERERDRKRHKKEDDDYKGRDKDRSSGKSHKQTEDVEVSPRRKSGEDDSDAKVKERKPTHEEEIEEEHKRLDEEMEKRRRRVQEWQELRRKKEEAEREKQGEASASEPKLGKAWTLEGESDDEEATGTGKPDTTMDVDEDEKPVDKEPGDPMVADGDNGTVTSDLQDGTAGAPEDDDIDPLDAFMNSMVLPEVEKLNNTVSSSIPDKTNDKKLKDRGDEQGRSGQSRKVSNNKSIGRIIPGEDSDSDYSDLQVDDEDIEENDEDFMKRVKKSKADKLSIVDHSKIDYQPFKKNFYIEVKDISRLTPEEVAAYRKELELKIHGKDVPKPVKSWHQTGLTSKILETIRKLNYEKPMPIQAQALPDQPPVVTGDGPIGLIMAPTRELVQQIYSDIKKFGKVLGLRCVPVYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEVLARKSQEKCDTLFKDLLKSGYPCLSLHGAKDQTDRESTIADFKSNVCNMLIATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEEARYAPDLAKALELSEQVVPDDLKALADGFMAKVKQGLEQAHGTGYGGSGFKFNEEEDEERRAAKKAQAKGYGFEEDKSDSEDEDENIRKSGGDISQLAQILGGSKGTVPAIPNPISTAQLISNGGLNVPLQAVLGNLQTTTVLPIGGLPLTTNDGAARAALAAINLQHNLAKIQNEALPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQYFPPGKIAGPGERKLYLFIEGPSEQSVKRAKAELKLVLEDITNQALQLPGGSQPGKYSVV 1061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241778g00010 1061 CDD KH-I_AtRH42_like 959 1060 - -
Stsc241778g00010 1061 MobiDBLite consensus disorder prediction 824 869 - -
Stsc241778g00010 1061 MobiDBLite consensus disorder prediction 387 403 - -
Stsc241778g00010 1061 SMART helicmild6 686 767 IPR001650 -
Stsc241778g00010 1061 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 634 642 IPR000629 -
Stsc241778g00010 1061 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 510 538 IPR014014 GO:0003724
Stsc241778g00010 1061 MobiDBLite consensus disorder prediction 1 285 - -
Stsc241778g00010 1061 Gene3D - 545 682 IPR027417 -
Stsc241778g00010 1061 SMART ultradead3 480 696 IPR014001 -
Stsc241778g00010 1061 MobiDBLite consensus disorder prediction 372 386 - -
Stsc241778g00010 1061 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 551 688 IPR014001 -
Stsc241778g00010 1061 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 649 806 IPR001650 -
Stsc241778g00010 1061 MobiDBLite consensus disorder prediction 1 430 - -
Stsc241778g00010 1061 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 462 680 - -
Stsc241778g00010 1061 Coils Coil 237 285 - -
Stsc241778g00010 1061 Pfam DEAD/DEAH box helicase 550 675 IPR011545 GO:0003676|GO:0005524
Stsc241778g00010 1061 Coils Coil 72 152 - -
Stsc241778g00010 1061 CDD SF2_C_DEAD 680 776 - -
Stsc241778g00010 1061 Gene3D - 473 544 IPR027417 -
Stsc241778g00010 1061 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 551 783 IPR027417 -
Stsc241778g00010 1061 Gene3D - 683 782 IPR027417 -
Stsc241778g00010 1061 MobiDBLite consensus disorder prediction 831 869 - -
Stsc241778g00010 1061 MobiDBLite consensus disorder prediction 294 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241778g00010 Stsc-Chr241778 34951 38377 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241778g00010 508 787 Eukaryotic Initiation Factors Gene Family AT3G19760 26.446 1.02e-35 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241778g00010 K12811 - gmx:100784306 1268.06