Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241777g00013 ATGGCGGCTTGCATCACCTTCATGGTGTCGCAAGACGGAACCGGCGACTTCCAAACCGTGCAGGACGCCATCGACGCCGTCCCTCTCAGCAACACTCGCCGGACGGTGATTCGCGTTTCGCCGGGAATCTACCGGCAGCCTCTTTATGTCCCTAAGACGAAGAATTTCATCACTCTTGCCAGCCTCAATCCCGAAGATACTATTCTTACTTGGAACAACACTGCCTCCAAGATCGATCACCACCAACCTGCTAGGGTTATAGGGACTGGTACATTTGGTTGTGGAACTGTAATTGTAGAAGGAGAGGACTTCATTGCTGAGAATATTACTTTTGAGAATTCTTCCCCTCAGGGTTCAGGGCAAGCAGTGGCAATTAGAGTAACAGCAGATCGATGTGCCTTCTACAATTGCAGGTTCCTTGGATGGCAGGACACGCTTTACTTACATTACGGAAAAAATTATTTGAAAGATTGCTATATTGAAGGTAGTGTCGACTTTATCTTTGGCAATAGCACTGCTCTTCTGGAACACTGTCATATCTACTGCAAATCTGAAGGGTTCATAACTGCACAGAGCCGAAAGTCTTCACTGGAAACAACTGGCTATGTATTCTTGAGATGTGTTATCACAGGTAATGGGGAAAAATCATATGCCTGCCTTGGACGGCCTTGGGGCCCTTTCGGAAGGGTGGTCTTTGCATACACTTACATGGATCAATGTATAAAGCATGTTGGTTGGGATAACTGGGGAAAAGTTGAGAACGAGAGAAGTGCTTGCTTTTATGAATACAGGTGTTTTGGACCTGGTTGCTGTCCAACGAGACGGGTGACGTGGTGTAGAGAATTGTTGGATGAAGAAGCAGAGCAGTTCCTCATGCATCATTTCATCGACCCGGATCCCGAAAGGCCTTGGCTTGCTCACAGAATGGCCTTGAAGATTCCATATACAGCATAG 954 0.4696 MAACITFMVSQDGTGDFQTVQDAIDAVPLSNTRRTVIRVSPGIYRQPLYVPKTKNFITLASLNPEDTILTWNNTASKIDHHQPARVIGTGTFGCGTVIVEGEDFIAENITFENSSPQGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKNYLKDCYIEGSVDFIFGNSTALLEHCHIYCKSEGFITAQSRKSSLETTGYVFLRCVITGNGEKSYACLGRPWGPFGRVVFAYTYMDQCIKHVGWDNWGKVENERSACFYEYRCFGPGCCPTRRVTWCRELLDEEAEQFLMHHFIDPDPERPWLAHRMALKIPYTA 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241777g00013 317 Gene3D - 4 311 IPR012334 -
Stsc241777g00013 317 SUPERFAMILY Pectin lyase-like 3 304 IPR011050 -
Stsc241777g00013 317 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 6 300 - -
Stsc241777g00013 317 FunFam Pectinesterase 3 310 - -
Stsc241777g00013 317 ProSitePatterns Pectinesterase signature 2. 160 169 IPR033131 -
Stsc241777g00013 317 Pfam Pectinesterase 8 297 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241777g00013 Stsc-Chr241777 84169 87551 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241777g00013 9 310 Carbohydrate Esterase AT5G47500 38.462 3.06e-68 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241777g00013 K01051 - gmx:100795636 608.216