Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241777g00006 ATGGCTTTCCCTCCTTCTCCCTCTTTCATCTTCCATCATCAAGATGATCAACAACAACATCATAACCCCATCCGTACAACTCCCTTCCCTTCTTTCCCCACTCATAACCAACAACAACACCACTTCCCAGGTGCTGGTGCTGGTGCAGGTCCTTGGATGAAGCGATCCATGTCCTTTTCAGGCATAGACACCACCAAACACTGCGGCGGTGGCGGTGCCGACGAGTTGGTGCTTCACGGTGATGACGAGCTTTCCGACGACGGATCTCAAATCGGGGAGAAGAAGAAGAGGCTGGGCATGGAGCAGGTGAAGGCTCTGGAGAAGAGTTTCGAGGCCGGGAACAAGCTCGACCCCGAACGCAAAATGCAGCTGGCCAAAGCCCTTGGGCTTCAGCCACGGCAGATCGCCATTTGGTTTCAGAACCGCCGTGCAAGGTGGAAGACCAAGCAGCTCGAGAAGGAATATGAGGTTCTCAGGAAGCAATTTGATGCCGTTAAAGCCGATAACGACACCCTTAAGACGCAGAACCAGAAGCTCCACGCCGAGCTACAAGCTCTAAAGGGTAATAGGGAATGGTGTGAAACTGGAACAGTGATTACCCTAAAGAAAGAAAATGAGGGTTCTTGGAGCAACAATGGAAGTGATAATAGCTCAGATATGAATTTGGATCTTTCAAGAACACCAGTGATGAATAGTCCAGTGTCTTCTTCTCACCATCATCATCAGAATAATAATAATAATAATGATAATAATAATAGTAGTAAAAGCCTTGTTCTACCAAATTCTCTTAAGCCAACAAGCATAACACAGCTCCTTCAATGTTCATCTTCTTCAAGATCAGATCTTCAAGATGATCAAGGCTTTTGCAACATGTTCCACAACATTGATGAGCAGCAGCAGAATTTTTGGTCATGGCCTACTACTGAGAATAATAATAATCATCACCACCATTTTCATTGA 960 0.4604 MAFPPSPSFIFHHQDDQQQHHNPIRTTPFPSFPTHNQQQHHFPGAGAGAGPWMKRSMSFSGIDTTKHCGGGGADELVLHGDDELSDDGSQIGEKKKRLGMEQVKALEKSFEAGNKLDPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLEKEYEVLRKQFDAVKADNDTLKTQNQKLHAELQALKGNREWCETGTVITLKKENEGSWSNNGSDNSSDMNLDLSRTPVMNSPVSSSHHHHQNNNNNNDNNNSSKSLVLPNSLKPTSITQLLQCSSSSRSDLQDDQGFCNMFHNIDEQQQNFWSWPTTENNNNHHHHFH 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241777g00006 319 ProSitePatterns 'Homeobox' domain signature. 124 147 IPR017970 GO:0000981|GO:0006355
Stsc241777g00006 319 SUPERFAMILY Homeodomain-like 85 151 IPR009057 -
Stsc241777g00006 319 Gene3D - 86 157 - -
Stsc241777g00006 319 Pfam Homeodomain 95 147 IPR001356 GO:0003677
Stsc241777g00006 319 PRINTS Lambda-repressor HTH signature 129 145 IPR000047 GO:0003677
Stsc241777g00006 319 PRINTS Lambda-repressor HTH signature 120 129 IPR000047 GO:0003677
Stsc241777g00006 319 Coils Coil 141 189 - -
Stsc241777g00006 319 FunFam Homeobox-leucine zipper protein ATHB-13 86 153 - -
Stsc241777g00006 319 CDD homeodomain 94 150 IPR001356 GO:0003677
Stsc241777g00006 319 ProSiteProfiles 'Homeobox' domain profile. 89 149 IPR001356 GO:0003677
Stsc241777g00006 319 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 83 304 IPR045224 GO:0003700
Stsc241777g00006 319 SMART HOX_1 92 153 IPR001356 GO:0003677
Stsc241777g00006 319 MobiDBLite consensus disorder prediction 204 260 - -
Stsc241777g00006 319 Pfam Homeobox associated leucine zipper 149 188 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241777g00006 Stsc-Chr241777 33958 37318 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241777g00006 1 306 Homeobox Transcription Factor Family AT5G15150 45.794 3.33e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc241777g00006 Homeodomain 2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241777g00006 K09338 - gmx:100790803 322.013