Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241776g00012 ATGTCCTCCAATTCCATCATCCTCCTAAAACAACCTTCATTCCAATTCTCAACCCAACATCACCACCACCACCACCTTCTAAAACCCAAAACACCATTTTCAAAAACTATATTTTCTCCATATTACCCAAAATACCCTCCACCACCACTTTCCTTTACTAGAATCCACAGCTCCACCACCCCCATAACCAAAACCTCTTCAACCACCAAAAAGAACGAAACTTTACAATTCCTGACACCTTTTCTCATCTCAAACCACAAACCCATCATCTTGGGTTGGCTCTGCAGCGTCATCTCAGTCTTCTCTCTCTCCCAGCTCGTCTCTAGGCTCGGAAAATTCTCCAACGCCGCCATTGATGGGCCTCAATTGAGGAGCCAAGGTCTCATCTTGCTGTGTCTTGTGGCTGCCCGTTTGGTCTCCGGGTACGGGCAGCATGCCCTTCTTTGGGACGCTGCCCTTAAGACAGTGTACGAGACCATAGTACCTAGTACTCTCCAGCTATCGGCGATGATGGCTCAGATGATAGTTATAAGTCCAGTCCTTTCTTTAATTTCATTCACGGTCATTCCTTGCATGTCGCTTTTTGTTGCTTATCTTGGTCAAGAACTTCGAAAGATATCTAGAGAGGCACATCTTAGCATTGCTGCTCTCTCAGCATATCTAAATGAGATGATTCCTGCGATTTTCTTTGTGAAAGCAAACAACGCGGAGTTGTGTGAGAGTGCGAGGTTTAAGAGGCTGGCTCAGATCGACTATAATGCAAAATTGAACAAGAGGAGGATGAAAGCGGCTATTCCTCAGGTCATACAAGCTATTTACTATGGAACTCTCTCCATACTATGCGCTGGTTCGCTGTTGATTTCAAGAGGTTCATTTGATGGCCACAGCTTCATTGCCTTTGTGACATCATTGCTTTTCTCTATCGAACCAATCCAGGATGTGGGAAAAGCTTACAATGAATGGAGGCAGGGAGAGCCAGCTGTTGAACGCTTGCATGATATGACCAAGTTCAAAGATAAGGTGGTTGAGAAACCAGATGCTGTTGACTTAGAACATATTATGGGAGAGCTGACATTTCGTGACGTCTCCTTTAGATATAATGACGACACGCCTCATATTTTGAATGGGTTGAATCTTAACATTAGAGCCGGAGAGATAGTCGCTCTTGTCGGCCCTTCTGGTGGCGGGAAAACAACACTTGTAAAACTATTGCTTCGGCTTTATGACCCTGTGTCTGGCTCAATTCTAATTGATAACCATAACATTGAAAGCATTCGGTTGCGAAGTTTGAGAAAACATGTTGGTCTTGTTTCTCAAGATATAACCCTTTTTTCAGGTACAATTGCTGAAAACATTGGTTATAGGGATCTAACAACAAAAATCGACATGGAGAGGGTAAAGCAGGTAGCACAAACTGCTCATGCGGACGAGTTTATAAGAAAACTTCCCGAAGGATACGAAACCAATATCGGACCGAGGGGCTCTACCTTAAGCGGAGGCCAGAGGCAAAGGCTGGCTATTGCAAGGGCCCTCTATCAGAATCCCTCTATCTTAATTCTGGATGAAGCAACTTCGGCTTTAGATAGTAAATCCGAGTTATTGGTTAGAAAAGCTGTCGAGCACTTGATGGAAAATCGCACGGTGCTTGTGATAGCTCATCGCTTAGAAACAGTTATGATGGCTAAAAGAGTATTCGTTATGGATAATGGGAAGCTACAAGAAGTTCCAAGATCAACCATGTTTAATGGTCACAAGGATTCATTGTTATCATCTGGCCTTGTTATTTGA 1788 0.4374 MSSNSIILLKQPSFQFSTQHHHHHHLLKPKTPFSKTIFSPYYPKYPPPPLSFTRIHSSTTPITKTSSTTKKNETLQFLTPFLISNHKPIILGWLCSVISVFSLSQLVSRLGKFSNAAIDGPQLRSQGLILLCLVAARLVSGYGQHALLWDAALKTVYETIVPSTLQLSAMMAQMIVISPVLSLISFTVIPCMSLFVAYLGQELRKISREAHLSIAALSAYLNEMIPAIFFVKANNAELCESARFKRLAQIDYNAKLNKRRMKAAIPQVIQAIYYGTLSILCAGSLLISRGSFDGHSFIAFVTSLLFSIEPIQDVGKAYNEWRQGEPAVERLHDMTKFKDKVVEKPDAVDLEHIMGELTFRDVSFRYNDDTPHILNGLNLNIRAGEIVALVGPSGGGKTTLVKLLLRLYDPVSGSILIDNHNIESIRLRSLRKHVGLVSQDITLFSGTIAENIGYRDLTTKIDMERVKQVAQTAHADEFIRKLPEGYETNIGPRGSTLSGGQRQRLAIARALYQNPSILILDEATSALDSKSELLVRKAVEHLMENRTVLVIAHRLETVMMAKRVFVMDNGKLQEVPRSTMFNGHKDSLLSSGLVI 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241776g00012 595 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 144 574 IPR039421 -
Stsc241776g00012 595 SMART AAA_5 383 571 IPR003593 GO:0016887
Stsc241776g00012 595 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 346 575 IPR027417 -
Stsc241776g00012 595 FunFam ABC transporter ATP-binding protein 350 591 - -
Stsc241776g00012 595 Pfam ABC transporter 374 525 IPR003439 GO:0005524
Stsc241776g00012 595 Gene3D ABC transporter type 1, transmembrane domain 156 336 IPR036640 GO:0005524|GO:0016020
Stsc241776g00012 595 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 357 594 IPR003439 GO:0005524
Stsc241776g00012 595 SUPERFAMILY ABC transporter transmembrane region 78 336 IPR036640 GO:0005524|GO:0016020
Stsc241776g00012 595 ProSitePatterns ABC transporters family signature. 497 511 IPR017871 GO:0005524|GO:0016887
Stsc241776g00012 595 CDD ABC_6TM_exporters 89 331 - -
Stsc241776g00012 595 Gene3D - 347 591 IPR027417 -
Stsc241776g00012 595 Pfam ABC transporter transmembrane region 154 306 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc241776g00012 595 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 160 323 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241776g00012 Stsc-Chr241776 53255 57916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241776g00012 347 592 Calmodulin-binding Proteins AT2G36910 45.382 4.69e-59 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241776g00012 K02021 - gmx:100788075 743.421