Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241775g00009 ATGGCTTCTTTTGTTCTCAGAAACATAAATTCTAAGCGCTTTCTTCTCTCTTACCCTTCATTCCATCGTGCAATTTTCACCCTATCACATAACACTCCTCCACTCTACAGCAGTGATGAACAATCTCCATTATTGTCCCTTATTTCTCTTCGGAGATCCATGGCCACTTTCACTCGAACAAAGCCTCATCTTAATGTGGGAACCATTGGGCATGTTGATCATGGAAAAACCACACTAACTGCTGCAATTACAAAGGTGTTATCTGAAGAAGGTAAAGCCAAGGCCATTGCCTTTGAGGAGATAGACAAGGCTCCTGAGGAGAAGAAAAGAGGAATAACCATTGCTACAGCTCATGTAGAGTATGAGACAGCAAAGAGGCACTATGCCCATGTTGATTGCCCAGGACATGCAGACTATGTTAAGAACATGATTACTGGAGCTGCTCAAATGGATGGTGGAATTCTAGTGGTTTCTGCTCCGGATGGGCCTATGCCTCAAACAAAGGAACATATACTGCTTGCTAGACAGGTTGGTGTGCCATCATTGGTTTGTTTTCTAAACAAAGTTGATGCTGTTGATGACCCAGAGTTACTTGAACTTGTTGAGATGGAGCTTCGCGAGCTACTTAGTTTCTACAAATTTCCTGGGGATGAGATCCCGATTGTTCGAGGTTCTGCCCTGTCTGCCTTGCAGGGGACAAATGAAGAGCTTGGAAAGAAGGCTATCTTAAAATTAATGGAGGCTGTGGATGAATACATTTCTGATCCTGTAAGGCAGCTTGACAAGCCTTTCTTGATGCCAATAGAAGATGTTTTCTCAATTCAGGGGCGTGGAACTGTTGTGACAGGTCGTGTTGAACAAGGCACGATCAAAGTCGGCGAGGAGGTTGAAATATTAGGACTAACACAGGGTGCACCTATGAAGACTACTGTTACTGGTGTGGAAATGTTCAAGAAGATTTTGGATCAAGGGCAAGCTGGTGATAATGTGGGACTACTTCTGCGTGGTCTGAAGCGTGACGATGTACAGCGTGGAATGGTTATCTCCAAGCCTGGCACATTGAAAACATATAAGAAGTTTGAAGCAGAGATTTATGTCCTCTCAAAAGATGAAGGAGGTCGTCATACTGCTTTTTTCTCAAACTATAAGCCTCAGTTTTACTTGAGGACTGCCGATATTACCGGAAAAGTGCAGTTACCCGAAAATGTTAAGATGGTCATGCCTGGTGATAATGTGACCGCAAATTTTGAGCTGATATCACCTGTGCCTCTTGAATGCGGACAAAGATTTGCATTGAGAGAAGGAGGCAGAACTGTAGGAGCAGGAGTGGTCTCCAAAGTGATTGCCTAA 1350 0.4378 MASFVLRNINSKRFLLSYPSFHRAIFTLSHNTPPLYSSDEQSPLLSLISLRRSMATFTRTKPHLNVGTIGHVDHGKTTLTAAITKVLSEEGKAKAIAFEEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDAVDDPELLELVEMELRELLSFYKFPGDEIPIVRGSALSALQGTNEELGKKAILKLMEAVDEYISDPVRQLDKPFLMPIEDVFSIQGRGTVVTGRVEQGTIKVGEEVEILGLTQGAPMKTTVTGVEMFKKILDQGQAGDNVGLLLRGLKRDDVQRGMVISKPGTLKTYKKFEAEIYVLSKDEGGRHTAFFSNYKPQFYLRTADITGKVQLPENVKMVMPGDNVTANFELISPVPLECGQRFALREGGRTVGAGVVSKVIA 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241775g00009 449 NCBIfam elongation factor Tu 53 448 IPR004541 GO:0003746|GO:0005525|GO:0006414
Stsc241775g00009 449 Gene3D Translation factors 393 448 - -
Stsc241775g00009 449 NCBIfam small GTP-binding protein domain 65 200 IPR005225 GO:0005525
Stsc241775g00009 449 Gene3D - 53 256 IPR027417 -
Stsc241775g00009 449 Hamap Elongation factor Tu [tuf]. 52 449 IPR004541 GO:0003746|GO:0005525|GO:0006414
Stsc241775g00009 449 FunFam Elongation factor Tu 259 389 - -
Stsc241775g00009 449 FunFam Elongation factor Tu 52 256 - -
Stsc241775g00009 449 Pfam Elongation factor Tu domain 2 278 348 IPR004161 GO:0005525
Stsc241775g00009 449 SUPERFAMILY Translation proteins 258 354 IPR009000 -
Stsc241775g00009 449 PANTHER ELONGATION FACTOR TU-RELATED 55 448 - -
Stsc241775g00009 449 CDD EF_Tu 62 256 IPR041709 -
Stsc241775g00009 449 Pfam Elongation factor Tu GTP binding domain 61 254 IPR000795 GO:0003924|GO:0005525
Stsc241775g00009 449 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 102 117 IPR031157 -
Stsc241775g00009 449 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 59 279 IPR027417 -
Stsc241775g00009 449 PRINTS GTP-binding elongation factor signature 129 139 IPR000795 GO:0003924|GO:0005525
Stsc241775g00009 449 PRINTS GTP-binding elongation factor signature 65 78 IPR000795 GO:0003924|GO:0005525
Stsc241775g00009 449 PRINTS GTP-binding elongation factor signature 182 191 IPR000795 GO:0003924|GO:0005525
Stsc241775g00009 449 PRINTS GTP-binding elongation factor signature 145 156 IPR000795 GO:0003924|GO:0005525
Stsc241775g00009 449 PRINTS GTP-binding elongation factor signature 109 117 IPR000795 GO:0003924|GO:0005525
Stsc241775g00009 449 Pfam Elongation factor Tu C-terminal domain 354 447 IPR004160 -
Stsc241775g00009 449 Gene3D Translation factors 259 389 - -
Stsc241775g00009 449 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 61 257 IPR000795 GO:0003924|GO:0005525
Stsc241775g00009 449 CDD EFTU_II 264 352 IPR033720 -
Stsc241775g00009 449 CDD EFTU_III 355 444 - -
Stsc241775g00009 449 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 358 449 IPR009001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241775g00009 Stsc-Chr241775 49193 52824 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241775g00009 59 447 Eukaryotic Initiation Factors Gene Family AT5G60390 30.892 4.59e-46 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241775g00009 K02358 - gmx:102667962 756.903