Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc241775g00009 | ATGGCTTCTTTTGTTCTCAGAAACATAAATTCTAAGCGCTTTCTTCTCTCTTACCCTTCATTCCATCGTGCAATTTTCACCCTATCACATAACACTCCTCCACTCTACAGCAGTGATGAACAATCTCCATTATTGTCCCTTATTTCTCTTCGGAGATCCATGGCCACTTTCACTCGAACAAAGCCTCATCTTAATGTGGGAACCATTGGGCATGTTGATCATGGAAAAACCACACTAACTGCTGCAATTACAAAGGTGTTATCTGAAGAAGGTAAAGCCAAGGCCATTGCCTTTGAGGAGATAGACAAGGCTCCTGAGGAGAAGAAAAGAGGAATAACCATTGCTACAGCTCATGTAGAGTATGAGACAGCAAAGAGGCACTATGCCCATGTTGATTGCCCAGGACATGCAGACTATGTTAAGAACATGATTACTGGAGCTGCTCAAATGGATGGTGGAATTCTAGTGGTTTCTGCTCCGGATGGGCCTATGCCTCAAACAAAGGAACATATACTGCTTGCTAGACAGGTTGGTGTGCCATCATTGGTTTGTTTTCTAAACAAAGTTGATGCTGTTGATGACCCAGAGTTACTTGAACTTGTTGAGATGGAGCTTCGCGAGCTACTTAGTTTCTACAAATTTCCTGGGGATGAGATCCCGATTGTTCGAGGTTCTGCCCTGTCTGCCTTGCAGGGGACAAATGAAGAGCTTGGAAAGAAGGCTATCTTAAAATTAATGGAGGCTGTGGATGAATACATTTCTGATCCTGTAAGGCAGCTTGACAAGCCTTTCTTGATGCCAATAGAAGATGTTTTCTCAATTCAGGGGCGTGGAACTGTTGTGACAGGTCGTGTTGAACAAGGCACGATCAAAGTCGGCGAGGAGGTTGAAATATTAGGACTAACACAGGGTGCACCTATGAAGACTACTGTTACTGGTGTGGAAATGTTCAAGAAGATTTTGGATCAAGGGCAAGCTGGTGATAATGTGGGACTACTTCTGCGTGGTCTGAAGCGTGACGATGTACAGCGTGGAATGGTTATCTCCAAGCCTGGCACATTGAAAACATATAAGAAGTTTGAAGCAGAGATTTATGTCCTCTCAAAAGATGAAGGAGGTCGTCATACTGCTTTTTTCTCAAACTATAAGCCTCAGTTTTACTTGAGGACTGCCGATATTACCGGAAAAGTGCAGTTACCCGAAAATGTTAAGATGGTCATGCCTGGTGATAATGTGACCGCAAATTTTGAGCTGATATCACCTGTGCCTCTTGAATGCGGACAAAGATTTGCATTGAGAGAAGGAGGCAGAACTGTAGGAGCAGGAGTGGTCTCCAAAGTGATTGCCTAA | 1350 | 0.4378 | MASFVLRNINSKRFLLSYPSFHRAIFTLSHNTPPLYSSDEQSPLLSLISLRRSMATFTRTKPHLNVGTIGHVDHGKTTLTAAITKVLSEEGKAKAIAFEEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDAVDDPELLELVEMELRELLSFYKFPGDEIPIVRGSALSALQGTNEELGKKAILKLMEAVDEYISDPVRQLDKPFLMPIEDVFSIQGRGTVVTGRVEQGTIKVGEEVEILGLTQGAPMKTTVTGVEMFKKILDQGQAGDNVGLLLRGLKRDDVQRGMVISKPGTLKTYKKFEAEIYVLSKDEGGRHTAFFSNYKPQFYLRTADITGKVQLPENVKMVMPGDNVTANFELISPVPLECGQRFALREGGRTVGAGVVSKVIA | 449 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc241775g00009 | 449 | NCBIfam | elongation factor Tu | 53 | 448 | IPR004541 | GO:0003746|GO:0005525|GO:0006414 | |
Stsc241775g00009 | 449 | Gene3D | Translation factors | 393 | 448 | - | - | |
Stsc241775g00009 | 449 | NCBIfam | small GTP-binding protein domain | 65 | 200 | IPR005225 | GO:0005525 | |
Stsc241775g00009 | 449 | Gene3D | - | 53 | 256 | IPR027417 | - | |
Stsc241775g00009 | 449 | Hamap | Elongation factor Tu [tuf]. | 52 | 449 | IPR004541 | GO:0003746|GO:0005525|GO:0006414 | |
Stsc241775g00009 | 449 | FunFam | Elongation factor Tu | 259 | 389 | - | - | |
Stsc241775g00009 | 449 | FunFam | Elongation factor Tu | 52 | 256 | - | - | |
Stsc241775g00009 | 449 | Pfam | Elongation factor Tu domain 2 | 278 | 348 | IPR004161 | GO:0005525 | |
Stsc241775g00009 | 449 | SUPERFAMILY | Translation proteins | 258 | 354 | IPR009000 | - | |
Stsc241775g00009 | 449 | PANTHER | ELONGATION FACTOR TU-RELATED | 55 | 448 | - | - | |
Stsc241775g00009 | 449 | CDD | EF_Tu | 62 | 256 | IPR041709 | - | |
Stsc241775g00009 | 449 | Pfam | Elongation factor Tu GTP binding domain | 61 | 254 | IPR000795 | GO:0003924|GO:0005525 | |
Stsc241775g00009 | 449 | ProSitePatterns | Translational (tr)-type guanine nucleotide-binding (G) domain signature. | 102 | 117 | IPR031157 | - | |
Stsc241775g00009 | 449 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 59 | 279 | IPR027417 | - | |
Stsc241775g00009 | 449 | PRINTS | GTP-binding elongation factor signature | 129 | 139 | IPR000795 | GO:0003924|GO:0005525 | |
Stsc241775g00009 | 449 | PRINTS | GTP-binding elongation factor signature | 65 | 78 | IPR000795 | GO:0003924|GO:0005525 | |
Stsc241775g00009 | 449 | PRINTS | GTP-binding elongation factor signature | 182 | 191 | IPR000795 | GO:0003924|GO:0005525 | |
Stsc241775g00009 | 449 | PRINTS | GTP-binding elongation factor signature | 145 | 156 | IPR000795 | GO:0003924|GO:0005525 | |
Stsc241775g00009 | 449 | PRINTS | GTP-binding elongation factor signature | 109 | 117 | IPR000795 | GO:0003924|GO:0005525 | |
Stsc241775g00009 | 449 | Pfam | Elongation factor Tu C-terminal domain | 354 | 447 | IPR004160 | - | |
Stsc241775g00009 | 449 | Gene3D | Translation factors | 259 | 389 | - | - | |
Stsc241775g00009 | 449 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 61 | 257 | IPR000795 | GO:0003924|GO:0005525 | |
Stsc241775g00009 | 449 | CDD | EFTU_II | 264 | 352 | IPR033720 | - | |
Stsc241775g00009 | 449 | CDD | EFTU_III | 355 | 444 | - | - | |
Stsc241775g00009 | 449 | SUPERFAMILY | EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain | 358 | 449 | IPR009001 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc241775g00009 | Stsc-Chr241775 | 49193 | 52824 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc241775g00009 | 59 | 447 | Eukaryotic Initiation Factors Gene Family | AT5G60390 | 30.892 | 4.59e-46 | 164 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc241775g00009 | K02358 | - | gmx:102667962 | 756.903 |