Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241774g00011 ATGGCTGCAAGTCGCAAGCTTTATGGGGGTTCCAGCATGTCCCTTCTCCTCCAAAACGATACCAGGATTCCTTCTTCCTCTCATCAAGTTCTTGATTCTCTTTGGCTTCACACCTCTGACCCTTCTTCTTTCCAAGGTTCAAAAAGCATGGTTGATTTTGAGAATGGTAGAGGAAGCAACAACATAAGAGACAGAAGCTTGATCTTCCAACAAGGGCTAATGGAAAAAGAAGAAGAAAATAACAATAACAACAACAACAACAACAACGTGTGTGATGACGATTATGACCCTTCATGCTTCCACCAAACGACGGGTAACGGAAACAGCAAGAAACGGAGGCTAACGAGCGAGCAGGTACAGTTCTTGGAGAGAAGCTTCGAGGTGGAGAACAAGCTTGAGCCAGAAAGAAAAGTGCAGCTTGCTAAAGAGCTTGGGTTGCAGCCAAGGCAAGTGGCTATTTGGTTCCAGAACAGAAGGGCAAGGTTCAAGACCAAGCAGCTTGAGAAAGAGTATGGTGCATTGAAAGCTAGCTTTGACAAACTCAAAGCTGACTATGAAAGTCTTCTTCAACAGAATCACAACTTAAAACAACAGGTGAATTCTCTTAAGAATAAATTAATTCCTAGAGATAAAGACGATGAAAATTGTTCTTTGGATGAAAAATTATCTCCACATGATGTTGATATGATGAATTCAAACGATGAGAAGAAGGACCAGGAAGCTATTACGACGGAATTGATGATCTCAAATTCAACCTCTAATGAAAATGGGTCTAAGATGCCATTGACACACCCTATCATGCTAACATGCAAGCAAGAAGATGCAAATTCAGCCAAAAGCGATATCCTCGACGATTCGGATAGTCCACATTGCAATGACCAAAACCATCACCATCACCACCACCGCCACCTCTCATCGTTCATGGAGGAGGAGCCGGCTGAATCCGGCGATTTCTCTCAGGACGAGGATGATAACCTTAGCAAAAACCTTTTGACCCTTCCTTGTTTGCCTAAGGTTGAAGATAATGATGCATGCTACCATGAACAAAACGAGAACACTTGTGGCTTTGGTTTCCCAGTAGAAGACCAAACCTTTTGTTTCTGGCCTTATTAA 1113 0.4268 MAASRKLYGGSSMSLLLQNDTRIPSSSHQVLDSLWLHTSDPSSFQGSKSMVDFENGRGSNNIRDRSLIFQQGLMEKEEENNNNNNNNNNVCDDDYDPSCFHQTTGNGNSKKRRLTSEQVQFLERSFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEKEYGALKASFDKLKADYESLLQQNHNLKQQVNSLKNKLIPRDKDDENCSLDEKLSPHDVDMMNSNDEKKDQEAITTELMISNSTSNENGSKMPLTHPIMLTCKQEDANSAKSDILDDSDSPHCNDQNHHHHHHRHLSSFMEEEPAESGDFSQDEDDNLSKNLLTLPCLPKVEDNDACYHEQNENTCGFGFPVEDQTFCFWPY 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241774g00011 370 Coils Coil 164 205 - -
Stsc241774g00011 370 MobiDBLite consensus disorder prediction 275 324 - -
Stsc241774g00011 370 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 87 264 IPR045224 GO:0003700
Stsc241774g00011 370 FunFam homeobox-leucine zipper protein ATHB-6-like 113 159 - -
Stsc241774g00011 370 ProSiteProfiles 'Homeobox' domain profile. 105 165 IPR001356 GO:0003677
Stsc241774g00011 370 ProSitePatterns 'Homeobox' domain signature. 140 163 IPR017970 GO:0000981|GO:0006355
Stsc241774g00011 370 Gene3D - 102 172 - -
Stsc241774g00011 370 CDD homeodomain 110 166 IPR001356 GO:0003677
Stsc241774g00011 370 PRINTS Lambda-repressor HTH signature 145 161 IPR000047 GO:0003677
Stsc241774g00011 370 PRINTS Lambda-repressor HTH signature 136 145 IPR000047 GO:0003677
Stsc241774g00011 370 MobiDBLite consensus disorder prediction 277 294 - -
Stsc241774g00011 370 SUPERFAMILY Homeodomain-like 95 167 IPR009057 -
Stsc241774g00011 370 Pfam Homeobox associated leucine zipper 165 206 IPR003106 GO:0006355|GO:0043565
Stsc241774g00011 370 Pfam Homeodomain 110 163 IPR001356 GO:0003677
Stsc241774g00011 370 SMART HOX_1 108 169 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241774g00011 Stsc-Chr241774 80603 83148 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241774g00011 110 206 Homeobox Transcription Factor Family AT3G01470 65.979 2.78e-39 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc241774g00011 Homeodomain 4.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241774g00011 - K09338 adu:107489132 601.668