Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241774g00007 ATGAGTCGCAAAAGAGACAAACCCTCTTACACTTCTTCCCGCCACGCTCCCTACCCCAAGCGCCGCCGCCCTCCGCCGGAGCACGTGCTTCACCAGGAGGATGAGGACAGACCAACCTCGAGGCCTGCGCCGCCGTCCGCCGTGGTCGTCATGGGCCTCCCCAACGACTGCTCCGTCCTCGACCTCAAGTCCCGCTTCGAGATCTATGGCCCCATTGCTCGCATCCGCATCGACGGCGACGCCGTCGGATATATCACCTACCGGACCAAGGACTCTGCCGACGCGGCTATCGCCGCCGGCGCCGACCCTTCCTTTGGAATCACTCTTCTATCGAGAAAGGTTCAGGTGTTGTGGGCAACTGACCCTCTAGCTATGTGGAGGGAAGGAATTGGTAACAACAAGAAGGACAACGGGTCAATGTCAAAGCTTGCAATACCAGAACCAGTGATGATAACTCAGGTAGCTCAGTTCTTGAAGCGCCTTTCAAGGGAAGAGAAATAG 501 0.5768 MSRKRDKPSYTSSRHAPYPKRRRPPPEHVLHQEDEDRPTSRPAPPSAVVVMGLPNDCSVLDLKSRFEIYGPIARIRIDGDAVGYITYRTKDSADAAIAAGADPSFGITLLSRKVQVLWATDPLAMWREGIGNNKKDNGSMSKLAIPEPVMITQVAQFLKRLSREEK 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241774g00007 166 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 98 IPR000504 GO:0003723
Stsc241774g00007 166 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 121 IPR000504 GO:0003723
Stsc241774g00007 166 MobiDBLite consensus disorder prediction 20 40 - -
Stsc241774g00007 166 SUPERFAMILY RNA-binding domain, RBD 24 130 IPR035979 GO:0003676
Stsc241774g00007 166 SMART rrm1_1 47 117 IPR000504 GO:0003723
Stsc241774g00007 166 Gene3D - 1 123 IPR012677 -
Stsc241774g00007 166 MobiDBLite consensus disorder prediction 1 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241774g00007 Stsc-Chr241774 32392 34139 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241774g00007 1 150 Homeobox Transcription Factor Family AT1G27050 55.484 4.24e-47 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241774g00007 - - ccaj:109806897 189.504