Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241773g00001 ATGGCCTTATCAAGCTCACACATACAAAGGTTCCTCTTAGGGAACCTCCATGGCAGCTTCTCCTCCACTTCAAAGCATTATTATCATCACAACCACAGAAACACCTTTGCTGCTGTTACATGCACAAGCAGAAGCAGGTGCTACTCTGCCATTGCCATTGATGCACCTTCATCTTTAGCTGATGAGGTTCCTGGTGTAAGATGGGGATCCATAGCTTTGCAGGGTATAAGGGAAGAGATGGAGGATGATATCATTGTTCGCCCTAATGGCCTTGATGGCTTCTCTTTTGCTGCTGTTTTTGATGGCCATGGAGGCTTCTCTTCTGTTGAGTTCCTCAGTGCAAACTATAGGGATGAGCTCTACAAGGAGTGTCTTGAAGCCTTACAAGGTGGGTTCTTATTGGTTGAGAAGGATTTCAATGCCATTAAAGAAGCATTAGAGGAGGCATTCGCCAAAGCTGACGCGAAGTTGTTAAAATGGCTTGAAATGAAGGGAGAGGAGGACGAATCAGGCGCAACAGCAACTGCAGTGTTCATAGGAGACGATACGCTGCTCATTTCACATATCGGCGACTCGTCTGTGGTTCTATCTAGAGCTGGAAAAGCAGAAATGCTTACTAGTCCTCACCGACCATATGGGAGCAACAAGGCTTCTCTTCAAGAAATCAAAAGAATCAGAGAAGCAGGTGGATGGATTGTCAATGGTAGAATTTGCGGAGACATTGCTGTATCTCGTGCATTCGGGGACGTACGATACAAAACAAAGAAGAATGAGATGCTACAGAAAGGAGTTCAAGAAGGAAGATGGTCACAAAAGTTTATTTCTCGGGTACGGCTCAACAATGATTTAGTTGTTGCATATCCTGATATTTATCAAGTAAATCTTGACTCAGATACAGAGTTTATAGTATTAGCTTCAGATGGATTATGGGACTATATGAGCAGCTCAGATGCAGTTTCCTTTGTGAGGGAACAGTTACAGAAACATGGAAACATTCAGCTAGCCTGTGAAGCGCTTGCACAAGCAGCTTTGGACCGTAGAACACAGGATAATGTCAGCATTATAATTGCTGATTTAGGGAAGACAGATTGGCAGAATGTGTCACTGCAGCAACAAAATATGGTATTTGAGCTGGCTCAAGCCCTTGCTACCATTGCTATTGTGTCCATTGGAATTTGGTTTTCATCTCAGCTTTCTTTGTAG 1203 0.4364 MALSSSHIQRFLLGNLHGSFSSTSKHYYHHNHRNTFAAVTCTSRSRCYSAIAIDAPSSLADEVPGVRWGSIALQGIREEMEDDIIVRPNGLDGFSFAAVFDGHGGFSSVEFLSANYRDELYKECLEALQGGFLLVEKDFNAIKEALEEAFAKADAKLLKWLEMKGEEDESGATATAVFIGDDTLLISHIGDSSVVLSRAGKAEMLTSPHRPYGSNKASLQEIKRIREAGGWIVNGRICGDIAVSRAFGDVRYKTKKNEMLQKGVQEGRWSQKFISRVRLNNDLVVAYPDIYQVNLDSDTEFIVLASDGLWDYMSSSDAVSFVREQLQKHGNIQLACEALAQAALDRRTQDNVSIIIADLGKTDWQNVSLQQQNMVFELAQALATIAIVSIGIWFSSQLSL 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241773g00001 400 ProSitePatterns PPM-type phosphatase domain signature. 96 104 IPR000222 GO:0043169
Stsc241773g00001 400 Pfam Protein phosphatase 2C 69 352 IPR001932 -
Stsc241773g00001 400 SUPERFAMILY PP2C-like 62 360 IPR036457 -
Stsc241773g00001 400 SMART PP2C_4 57 357 IPR001932 -
Stsc241773g00001 400 FunFam Protein phosphatase 2C 57 66 366 - -
Stsc241773g00001 400 CDD PP2Cc 74 359 IPR001932 -
Stsc241773g00001 400 PANTHER PROTEIN PHOSPHATASE 2C 57 357 IPR015655 GO:0004722|GO:0006470
Stsc241773g00001 400 ProSiteProfiles PPM-type phosphatase domain profile. 67 359 IPR001932 -
Stsc241773g00001 400 Gene3D - 66 366 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241773g00001 Stsc-Chr241773 701 5162 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241773g00001 1 336 PP2C-type Phosphatase Gene Family AT4G27800 60.177 2.95e-141 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241773g00001 K04457 - gmx:100784071 611.683