Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241772g00019 ATGTTGGACCTTAATCTCAACTTCGATTCCGCCTCCGCCATCCAAATGGAAAGTTCCGGAAGCTTCAATTCCTCCCTCGCCAATGCCGACACCGAGGATTCATGCTCCTACGGAGGCACCGCTGACGCCGTACCCTACAACTTCTCCATACTCAAGAACGCCGTCGCCGGGGATGGAGACACTGGAGCTGCCGCCGCTGGAGACGACGCTTGTGTACGGACAATCCAGCTTTTTCCGGTGGTCGGAGCCGGTGACGGTGTTGCAGCTGAGCAGTTACGTGGCTCATCGTCAGGTAGTAATAAGGCGTGGTTGGAATTTGTAACGAACGAGGATAATCGAGGCGGTGGTAGTGCCACGGCGGCGGCGGTGGAGGCGGTGGAGCAGAGAATGGTTCCTCAGAGGGCGCAGCAGGTGAAGAAGAGTCGGCGTGGACCGAGGTCGCGAAGCTCGCAGTATCGCGGCGTGACGTTCTATCGAAGGACCGGACGATGGGAATCGCATATTTGGGACTGTGGGAAACAAGTGTACTTGGGTGGATTTGATACAGCACATGCTGCGGCTAGGGCATATGATCGAGCTGCAATCAAGTTCCGTGGCATTGATGCAGATATCAATTTCAACGTCAGCGATTATGATGAAGATATAAAGCAGATGAGTAACTTCACAAAGGAAGAGTTTGTGCATATTCTGCGTCGGCAGAGCACTGGTTTTTCCAGGGGGAGCTCCAAATACAGGGGAGTTACCCTGCACAAATGTGGTAGATGGGAAGCACGCATGGGACAGTTTCTTGGGAAAAAGTATATCTATCTTGGACTATTCGATAGTGAGCTAGAGGCTGCAAGGGCATATGATAGGGCTGCTATAAAGTGCAATGGAAGGGAAGCAGTTACTAACTTTGAGCCCAGCTCGTATGAAGGAAAGGTAAATTCTCATGATGAGAATGAAGATAACAAGCGAAGTCTTGATCTTAATTTGGGCATAGCTCCCCCTTCTTTCTCTGAAGATCAAGTCAATAACAATGGGATAGGTTTCCAAGTTCAGCCTAGCTGGGATGACATCCCTATTGATCGGAGATTTATGTTTGAGCACTCTGCATCAAGATCACTGAATACTCAGCCACCTCATGGATTCTCCATAGCATCTCAGCATCCTTCTGCTTGGGGCGGTACTGATTTCTTTCCCATGTACAAGGAAAGCGCAATAACAAATATGATGGAAGCCAATCCCTTGCAAAATTGGGCATGGCAAGTCCAAGGTCATTGTGGCGGGGCAACTCCAATTCCACCTGTCTCTGCTGCAGCATCATCAGGATTCCCTTCAACATTAATCCCATCAGCTGCGGATAATCAAATACATTTTCCAAACATGACATTCCTCTACCCTAACTTCCATCCGTCGATCGCCAATTCCGGCACCATGTCACCCTTCTACTAA 1434 0.4965 MLDLNLNFDSASAIQMESSGSFNSSLANADTEDSCSYGGTADAVPYNFSILKNAVAGDGDTGAAAAGDDACVRTIQLFPVVGAGDGVAAEQLRGSSSGSNKAWLEFVTNEDNRGGGSATAAAVEAVEQRMVPQRAQQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGIDADINFNVSDYDEDIKQMSNFTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSELEAARAYDRAAIKCNGREAVTNFEPSSYEGKVNSHDENEDNKRSLDLNLGIAPPSFSEDQVNNNGIGFQVQPSWDDIPIDRRFMFEHSASRSLNTQPPHGFSIASQHPSAWGGTDFFPMYKESAITNMMEANPLQNWAWQVQGHCGGATPIPPVSAAASSGFPSTLIPSAADNQIHFPNMTFLYPNFHPSIANSGTMSPFY 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241772g00019 477 CDD AP2 242 302 IPR001471 GO:0003700|GO:0006355
Stsc241772g00019 477 Pfam AP2 domain 242 292 IPR001471 GO:0003700|GO:0006355
Stsc241772g00019 477 Pfam AP2 domain 151 199 IPR001471 GO:0003700|GO:0006355
Stsc241772g00019 477 FunFam AP2-like ethylene-responsive transcription factor 242 302 - -
Stsc241772g00019 477 PRINTS Ethylene responsive element binding protein signature 244 255 IPR001471 GO:0003700|GO:0006355
Stsc241772g00019 477 PRINTS Ethylene responsive element binding protein signature 282 302 IPR001471 GO:0003700|GO:0006355
Stsc241772g00019 477 SUPERFAMILY DNA-binding domain 150 209 IPR016177 GO:0003677
Stsc241772g00019 477 ProSiteProfiles AP2/ERF domain profile. 243 300 IPR001471 GO:0003700|GO:0006355
Stsc241772g00019 477 FunFam AP2-like ethylene-responsive transcription factor 150 209 - -
Stsc241772g00019 477 MobiDBLite consensus disorder prediction 132 151 - -
Stsc241772g00019 477 ProSiteProfiles AP2/ERF domain profile. 151 207 IPR001471 GO:0003700|GO:0006355
Stsc241772g00019 477 SMART rav1_2 151 213 IPR001471 GO:0003700|GO:0006355
Stsc241772g00019 477 SMART rav1_2 243 306 IPR001471 GO:0003700|GO:0006355
Stsc241772g00019 477 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 102 326 - -
Stsc241772g00019 477 SUPERFAMILY DNA-binding domain 242 301 IPR016177 GO:0003677
Stsc241772g00019 477 CDD AP2 151 209 IPR001471 GO:0003700|GO:0006355
Stsc241772g00019 477 Gene3D AP2/ERF domain 150 209 IPR036955 GO:0003700|GO:0006355
Stsc241772g00019 477 Gene3D AP2/ERF domain 242 301 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241772g00019 Stsc-Chr241772 98168 100988 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241772g00019 74 326 AP2-EREBP Transcription Factor Family AT4G36920 67.704 1.65e-96 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Stsc241772g00019 AP2 1.1e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241772g00019 K09284 - gmx:100808212 651.358