Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241772g00013 ATGAAGAAGGCGCTTCCCGCCAACGGAAAAATCGCCAAGGATGCCAAAGAGACTGTTCAGGAATGCGTCTCCGAGTTTATCAGCTTCATCACCAGCGAGGCCTCTGATAAGTGCCAGAGAGAGAAGAGGAAGACTATTAACGGTGATGATTTGCTCTGGGCAATGGCGACTCTCGGTTTCGAGGATTATATTGATCCCTTGAAGATTTACCTCACAAGATACAGAGAGATGGAGGGTGATACAAAGGGTTCAGCTAAGGGTGGAGATCCTTCTGCTAAGAAAGATGTTCAACCAAGTCCTAATGCTCAGCTTGCTCATCAAGGTTCTTTCTCACAAGGGGTTAGTTACACTAACTCTCAGGGTCAACATATGATGGTTCCTATGCAGGGTCCGGAGTAG 399 0.4712 MKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREMEGDTKGSAKGGDPSAKKDVQPSPNAQLAHQGSFSQGVSYTNSQGQHMMVPMQGPE 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241772g00013 132 MobiDBLite consensus disorder prediction 79 132 - -
Stsc241772g00013 132 MobiDBLite consensus disorder prediction 96 125 - -
Stsc241772g00013 132 Gene3D Histone, subunit A 1 114 IPR009072 GO:0046982
Stsc241772g00013 132 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 110 IPR027113 GO:0001228|GO:0006355|GO:0016602
Stsc241772g00013 132 ProSitePatterns NF-YB/HAP3 subunit signature. 22 38 IPR003956 GO:0005634|GO:0006355|GO:0043565
Stsc241772g00013 132 SUPERFAMILY Histone-fold 1 91 IPR009072 GO:0046982
Stsc241772g00013 132 PRINTS CCAAT-binding transcription factor subunit A signature 19 37 - -
Stsc241772g00013 132 PRINTS CCAAT-binding transcription factor subunit A signature 57 75 - -
Stsc241772g00013 132 PRINTS CCAAT-binding transcription factor subunit A signature 38 56 - -
Stsc241772g00013 132 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 1 55 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241772g00013 Stsc-Chr241772 50419 54484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241772g00013 1 132 CCAAT-HAP3 Transcription Factor Family AT3G53340 78.519 4.02e-73 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Stsc241772g00013 CBFD_NFYB_HMF 3.8e-21 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241772g00013 K08065 - gmx:100798667 262.692