Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241772g00011 ATGCACAGAATAGGGGAAGAGTCGCATCCGCAGCAGATGTGCGGATATGGAAACTCCTCCACCGATCCATTTGGTTTACTTCATATACTCGATGTTTATTTCCCTCAGCAACTGTTCACTGTGCAAGATTCTTGGCTCAACCTCACTTCTGCTCTTCTCACCTTCTTCTCTTCTTCCTCCGGCCAAAGCCTAGCTTCTCAGGTGAAAAATGATTATGGAAACTTTGTCCTGTCAGTAGACTTTCAGCAACTCAAACAAATATGCCATGTTGAGGAATTTTATGCAATGTTGGAGGAGAAACCTAAAATTGCTCTCTTATGCATGAGTGCCGCAGTTCACAAGGTTTTGCTTTCTAATTCGGAGAATGACAAGCCGGAGCTTGATGCAAAAGTAGATATCCGTCTTCATAACTGTCCTGAAACTATGATTGCTCTCAAGAACTTAAAAGCAGCTTACATTGACAAGCTTGTCTCAGTCCGTGGTACTGCTGTGAAAGTCAGCACTGTCAAGCCTCTTGTAGTAGAACTGACTTTCGAATGCAGTAAGTGTAAACAAAGTATTACGCGTGTATTTCCAGACGGCAAGTATTCACCTCCTTCAATTTGTAATTTGAATGGCTGCAAGAGCAAAATCTTTATTCCATTGCGATCAACTGCTCAAACTATTGATTTTCAAAAAATAAGAGTTCAAGAGATATTAAAACCTGAAGACCATGAAGAAGGGAGAGTGCCTCGAACAGTGGAATGTGAGCTTACTCAAGATCTTGTAGATGTGTGCATACCTGGTGATGTGGTGACTGTTACTGGAATTATAAGAGGAATTAACACATACATGGATATTGGAGGAGGGAAGTCAAAGAACAGAAGCCAGGGATTTTACTACTTATATCTGGAAGCTGTATCTGTAAAAAATTCGAAGTCACAGTCCACTACTGGAGATTTGCAAGAACCTAATCCCAAAGCTAGACCATCTGAGCTGTTTGATCTGTTTTCATTTTCTTCGAGGGATTTAGAATTTGTAGTGAAGTTTGTGGAGGAGAATGGTTCAGATTCGTTTCGTCAAATCCTTCAATCTATATGCCCATCCATCTATGGCCATGAGCTTGTTAAAGCTGGAATAACTCTATCATTATTTGGTGGTGTGCGAAAGCATTCTATGGATCCAAATAAGGTTCCTGTGAGGGGAGACATTCATATTATAATTGTTGGTGATCCTGGTCTTGGTAAAAGCCAATTGCTACAAGCAGCAGCAGCAGTTTCTCCACGTGGCATTTATGTTTGTGGGAATGCCACAACTAAAGCTGGCCTTACGGTAGCTGTAGTGAAGGATTCTATGACTAATGATTATGCATTTGAGGCTGGTGCCATGGTTCTGGCTGATAGTGGATTGTGCTGTATTGATGAGTTTGATAAAATGTCATCAGAACATCAGGCTTTACTAGAGGCAATGGAGCAACAATGTGTTTCCATTGCAAAGGCCGGTCTAGTAGCAAGTTTATCATCCCGAACTTCTGTCTTGGCGGCTGCAAACCCCGTTGGTGGTCATTATAACCGGGCGAAAACCGTCAATGAAAATTTGAAAATGAGTGCTGCTCTCCTGTCACGTTTTGATTTGATTTTCATACTGCTAGACAAACCTGATGAGCTTCTAGACAAGCGACTCTCTGAGCACATTATGTCTCTTCATGCTGGGACTGGACAAAATTCACTGGCACTGAAAAAACGACGTGGAGATCCGTCCCCTGACTCCAGAACTGTTGTATCGCAGAATGCTGAAAGTGGTGTAAATTTGGGTGTTACATCTGGTTCTTTGGTTTCAAGGTTGAGACTTGACCCAGAGAGAGACAGAGATTTTGTTCCATTGCCCAGTCAACTTCTTCGTAAATACATTGCTTATGCAAGAAGTTTTGTATTTCCAAGGTGA 1923 0.4181 MHRIGEESHPQQMCGYGNSSTDPFGLLHILDVYFPQQLFTVQDSWLNLTSALLTFFSSSSGQSLASQVKNDYGNFVLSVDFQQLKQICHVEEFYAMLEEKPKIALLCMSAAVHKVLLSNSENDKPELDAKVDIRLHNCPETMIALKNLKAAYIDKLVSVRGTAVKVSTVKPLVVELTFECSKCKQSITRVFPDGKYSPPSICNLNGCKSKIFIPLRSTAQTIDFQKIRVQEILKPEDHEEGRVPRTVECELTQDLVDVCIPGDVVTVTGIIRGINTYMDIGGGKSKNRSQGFYYLYLEAVSVKNSKSQSTTGDLQEPNPKARPSELFDLFSFSSRDLEFVVKFVEENGSDSFRQILQSICPSIYGHELVKAGITLSLFGGVRKHSMDPNKVPVRGDIHIIIVGDPGLGKSQLLQAAAAVSPRGIYVCGNATTKAGLTVAVVKDSMTNDYAFEAGAMVLADSGLCCIDEFDKMSSEHQALLEAMEQQCVSIAKAGLVASLSSRTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLIFILLDKPDELLDKRLSEHIMSLHAGTGQNSLALKKRRGDPSPDSRTVVSQNAESGVNLGVTSGSLVSRLRLDPERDRDFVPLPSQLLRKYIAYARSFVFPR 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241772g00011 640 SMART mcm 141 631 IPR031327 GO:0003677|GO:0005524|GO:0032508
Stsc241772g00011 640 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 361 634 IPR027417 -
Stsc241772g00011 640 Coils Coil 466 486 - -
Stsc241772g00011 640 ProSiteProfiles MCM family domain profile. 351 558 IPR001208 GO:0003677|GO:0005524|GO:0032508
Stsc241772g00011 640 FunFam DNA helicase MCM8 isoform X1 172 223 - -
Stsc241772g00011 640 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 70 640 IPR031327 GO:0003677|GO:0005524|GO:0032508
Stsc241772g00011 640 Pfam MCM P-loop domain 349 562 IPR001208 GO:0003677|GO:0005524|GO:0032508
Stsc241772g00011 640 Gene3D - 329 640 IPR027417 -
Stsc241772g00011 640 MobiDBLite consensus disorder prediction 569 592 - -
Stsc241772g00011 640 SUPERFAMILY Nucleic acid-binding proteins 71 275 IPR012340 -
Stsc241772g00011 640 PRINTS Mini-chromosome maintenance (MCM) protein family signature 532 540 IPR001208 GO:0003677|GO:0005524|GO:0032508
Stsc241772g00011 640 PRINTS Mini-chromosome maintenance (MCM) protein family signature 454 468 IPR001208 GO:0003677|GO:0005524|GO:0032508
Stsc241772g00011 640 PRINTS Mini-chromosome maintenance (MCM) protein family signature 481 494 IPR001208 GO:0003677|GO:0005524|GO:0032508
Stsc241772g00011 640 PRINTS Mini-chromosome maintenance (MCM) protein family signature 505 517 IPR001208 GO:0003677|GO:0005524|GO:0032508
Stsc241772g00011 640 PRINTS Mini-chromosome maintenance (MCM) protein family signature 394 409 IPR001208 GO:0003677|GO:0005524|GO:0032508
Stsc241772g00011 640 FunFam Retrovirus-related Pol polyprotein LINE-1 330 484 - -
Stsc241772g00011 640 Gene3D - 172 222 - -
Stsc241772g00011 640 Gene3D - 145 274 IPR012340 -
Stsc241772g00011 640 SMART AAA_5 395 547 IPR003593 GO:0016887
Stsc241772g00011 640 Pfam MCM OB domain 145 273 IPR033762 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241772g00011 Stsc-Chr241772 42717 47602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241772g00011 18 640 Core DNA Replication Machinery Family AT3G09660 68.640 0.0 874
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241772g00011 K10737 - gmx:100784549 1036.94