LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc241771g00007	ATGAAGTTCAACATTGCTAATCCCACTACTGGATGCCAGAAGAAGCTCGAGATCGACGATGACCAGAAGCTACGTGCATTTTGGGACAAGAGGATCTCACAGGAGGTCCTTGGTGATGCTCTTGGCGAGGAATTCAAAGGCTATGTCTTCAAAATCACTGGTGGCTGTGACAAGCAAGGATTCCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGTCTCTTGCTTCACAGAGGAACTCCTTGCTTCCGGGGATACGGAAGGCGTAACGGAGAGCGTAGGAGAAAGTCTGTTCGTGGATGCATTGTCAGCCCTGATCTCTCTGTTTTGAACTTGGTTATTGTGAAGAAGGGTGACAGTGATCTACCTGGCCTAACTGATGTTGAGAAGCCAAGGATGAGGGGCCCAAAGAGAGCATCCAAAATCCGCAAGCTGTTCAACCTCTCAAAGGAGGATGATGTGAGGAAGTATGTTAACACCTACCGCAGAACCTTTACAACCAAAAATGGCAAAAAGGTGAGCAAGGCTCCTAAGATACAAAGACTGGTGACTCCTTTGACACTCCAAAGGAAGCGCGCGAGGATTGCTGACAAGAAGAAGAGAATTGCCAAGGCCAAGTCAGAGGCAGCAGAGTATCAGAAGCTTCTTGCATCAAGGTTGAAGGAACAGAGGGAGCGCCGTAGTGAGAGCTTGGCCAAGAGGAGATCCAAGATTTCCAGTGCAGCTGCCAAGACAACTGCATAA	747	0.4886	MKFNIANPTTGCQKKLEIDDDQKLRAFWDKRISQEVLGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGDSDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKNGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQRERRSESLAKRRSKISSAAAKTTA	248

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc241771g00007	248	Coils	Coil	189	216	-	-
	Stsc241771g00007	248	PANTHER	40S RIBOSOMAL PROTEIN S6	1	240	IPR001377	GO:0003735\|GO:0005840\|GO:0006412
	Stsc241771g00007	248	ProSitePatterns	Ribosomal protein S6e signature.	52	63	IPR018282	GO:0003735\|GO:0005840\|GO:0006412
	Stsc241771g00007	248	MobiDBLite	consensus disorder prediction	219	248	-	-
	Stsc241771g00007	248	Gene3D	-	133	234	-	-
	Stsc241771g00007	248	Pfam	Ribosomal protein S6e	1	128	IPR001377	GO:0003735\|GO:0005840\|GO:0006412
	Stsc241771g00007	248	PIRSF	RPS6e	1	248	IPR014401	GO:0003735\|GO:0005840\|GO:0006412
	Stsc241771g00007	248	SMART	Ribosomal_S6e_2	1	128	IPR001377	GO:0003735\|GO:0005840\|GO:0006412
	Stsc241771g00007	248	MobiDBLite	consensus disorder prediction	219	235	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc241771g00007	Stsc-Chr241771	67768	69769	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc241771g00007	1	248	Cytoplasmic Ribosomal Protein Gene Family	AT5G10360	72.177	1.17e-120	340

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc241771g00007	K02991		-	gmx:100800507	417.542