Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241771g00005 ATGTTGGTTAATATCATGCCTCCATCAACGACTAACGAATGGACACAGACTCATCATCATCATCATAACATCAAAAGCAAAGCAGCTTCTTCTTCTTCTTCTTCACCCATGGCTACATCATCATCTGCTAGGGTTATGGAAAAAGCAGGTGAAGAACTTGTCCAGCAGCAGCAACAAGCTCTCAAGTGCCCTCGATGCGATTCATCAAACACGAAATTCTGCTACTACAACAACTACAGCTTATCTCAGCCCAGACACTTCTGCAAAGCCTGCAAGCGTTACTGGACAAGAGGCGGCACCCTCCGCAACGTTCCCGTTGGCGGTGGCTGCAGAAAAACCACCAAGCGTCTCAAGCGCCAACAACAACAGCCTCCATCTTCTTCCATTGATCCAACTACTACTCCTTCTCCTTCTTCCTCTTCCACTCCTCCAACTACTTCAACTACTATCAACCCTTTCTTTTATGGGGTACCAGCTGGTAATAACAGCAGCAACAACAATAACTCCTGTGATGTGTTGAACCTACCTTCTTTCCCTGCTGGCTTCAATAATAATCATGTTCATCATCATCATCATCAGCCTCATCTAAGTGCTCTTACTGGGTTAGGTTTTGGTGGATTTGAAGCTACTGGTGGATTTGGTTCAAACAATAATAGTAGTAGCTCATTTCTTTCTGCTTACAATTCCATCTTTGGTTCTTCAGCTTCTACTACTCCTCCGGTTATGGCTTCCTTGCTGAGTTCCACTCTACTGCAACATAAATTCATGAATAATAATAATAATGGTGGATTCCAAGGGTTAGGTACTACTCCTGAGGTTGAAGAGATGCAAAGCGGTGAGGGAGAAAGAGGAGTGATGATGGGTTGTTGTTCTTCGAAAGAAGTGAAAGGTGAATTATTATTATTGGGACAAGAACAAGAGAGAGAAAGAGAAAGAGAGAGGTTGGAGTGGCAGAACCAGCAGATGATGATGGAACATACACATACTGTTGCCTTTTCTGATCCCTCTTCTTCGCTTTATTGGAGCACACCATCATCAGCCATGCCTCCTTCTTCTTGGAATGATCAACCCAATATTGCTCCTTCTTCACTCACTTCACTCATCTAG 1107 0.4372 MLVNIMPPSTTNEWTQTHHHHHNIKSKAASSSSSSPMATSSSARVMEKAGEELVQQQQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKTTKRLKRQQQQPPSSSIDPTTTPSPSSSSTPPTTSTTINPFFYGVPAGNNSSNNNNSCDVLNLPSFPAGFNNNHVHHHHHQPHLSALTGLGFGGFEATGGFGSNNNSSSSFLSAYNSIFGSSASTTPPVMASLLSSTLLQHKFMNNNNNGGFQGLGTTPEVEEMQSGEGERGVMMGCCSSKEVKGELLLLGQEQERERERERLEWQNQQMMMEHTHTVAFSDPSSSLYWSTPSSAMPPSSWNDQPNIAPSSLTSLI 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241771g00005 368 MobiDBLite consensus disorder prediction 1 53 - -
Stsc241771g00005 368 MobiDBLite consensus disorder prediction 27 42 - -
Stsc241771g00005 368 ProSitePatterns Zinc finger Dof-type signature. 63 99 IPR003851 GO:0003677|GO:0006355
Stsc241771g00005 368 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 36 247 IPR045174 GO:0003700|GO:0006355
Stsc241771g00005 368 MobiDBLite consensus disorder prediction 119 153 - -
Stsc241771g00005 368 ProSiteProfiles Zinc finger Dof-type profile. 61 115 IPR003851 GO:0003677|GO:0006355
Stsc241771g00005 368 MobiDBLite consensus disorder prediction 341 368 - -
Stsc241771g00005 368 Pfam Dof domain, zinc finger 59 115 IPR003851 GO:0003677|GO:0006355
Stsc241771g00005 368 MobiDBLite consensus disorder prediction 102 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241771g00005 Stsc-Chr241771 49722 54021 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241771g00005 54 118 C2C2-Dof Transcription Factor Family AT5G65590 81.538 4.23e-35 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc241771g00005 zf-Dof 1.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241771g00005 - - ahf:112791485 364.77