Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc241771g00004 | ATGGACACTAGAAGGTCTGAAGTAGGGAAGAGAACCTTGTTGAGGTACAAGGAGGAGGAGGAGGAGGAAGAAGAGGAGGAGGAGGAGGATGAAGAAGAGGAAGAAGAGATGGTGGGTTATGGAGAAGAATATGGTGGGAGGAGGAAGAGGGCAATGACAGATCTCATGAGCAGCAAGAAAGGTTTCAAAGGTGGAGGAAGCTCTTCAAATATGCCACCGTCCTGTCAGGTGGACGGTTGTGACTCTGATCTGAGTGAGGCCAAGCAGTACCATAGAAGACACAAGGTTTGTGAGTTCCATGCCAAGGCTCCTTCCGTACACATTTCAGGCCAACAACAACGCTTTTGTCAACAATGCAGCAGATTCCATGAACTCTCGGAGTTTGATGACTCGAAAAGGAGCTGTAGGAGGCGATTGGCTGGACATAATGAGAGGCGTCGCAAAAATAATGCAACCGAGAACCATGGAGAATAA | 474 | 0.4831 | MDTRRSEVGKRTLLRYKEEEEEEEEEEEEDEEEEEEMVGYGEEYGGRRKRAMTDLMSSKKGFKGGGSSSNMPPSCQVDGCDSDLSEAKQYHRRHKVCEFHAKAPSVHISGQQQRFCQQCSRFHELSEFDDSKRSCRRRLAGHNERRRKNNATENHGE | 157 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc241771g00004 | 157 | MobiDBLite | consensus disorder prediction | 19 | 39 | - | - | |
Stsc241771g00004 | 157 | ProSiteProfiles | Zinc finger SBP-type profile. | 72 | 149 | IPR004333 | GO:0003677 | |
Stsc241771g00004 | 157 | MobiDBLite | consensus disorder prediction | 138 | 157 | - | - | |
Stsc241771g00004 | 157 | PANTHER | SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 | 46 | 150 | IPR044817 | GO:0003677 | |
Stsc241771g00004 | 157 | MobiDBLite | consensus disorder prediction | 1 | 49 | - | - | |
Stsc241771g00004 | 157 | FunFam | Squamosa promoter-binding-like protein 14 | 66 | 136 | - | - | |
Stsc241771g00004 | 157 | PIRSF | SBP | 4 | 157 | IPR017238 | GO:0003677|GO:0003700|GO:0009908 | |
Stsc241771g00004 | 157 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
Stsc241771g00004 | 157 | Pfam | SBP domain | 75 | 148 | IPR004333 | GO:0003677 | |
Stsc241771g00004 | 157 | Gene3D | - | 65 | 136 | IPR036893 | GO:0003677|GO:0005634 | |
Stsc241771g00004 | 157 | Coils | Coil | 9 | 43 | - | - | |
Stsc241771g00004 | 157 | SUPERFAMILY | SBT domain | 73 | 151 | IPR036893 | GO:0003677|GO:0005634 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc241771g00004 | Stsc-Chr241771 | 29561 | 31224 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc241771g00004 | 63 | 150 | SBP-box Gene Family | AT2G33810 | 69.318 | 3.37e-42 | 135 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | SBP | Stsc241771g00004 | SBP | 1.7e-34 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc241771g00004 | - | - | adu:127745653 | 210.69 |