Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241771g00004 ATGGACACTAGAAGGTCTGAAGTAGGGAAGAGAACCTTGTTGAGGTACAAGGAGGAGGAGGAGGAGGAAGAAGAGGAGGAGGAGGAGGATGAAGAAGAGGAAGAAGAGATGGTGGGTTATGGAGAAGAATATGGTGGGAGGAGGAAGAGGGCAATGACAGATCTCATGAGCAGCAAGAAAGGTTTCAAAGGTGGAGGAAGCTCTTCAAATATGCCACCGTCCTGTCAGGTGGACGGTTGTGACTCTGATCTGAGTGAGGCCAAGCAGTACCATAGAAGACACAAGGTTTGTGAGTTCCATGCCAAGGCTCCTTCCGTACACATTTCAGGCCAACAACAACGCTTTTGTCAACAATGCAGCAGATTCCATGAACTCTCGGAGTTTGATGACTCGAAAAGGAGCTGTAGGAGGCGATTGGCTGGACATAATGAGAGGCGTCGCAAAAATAATGCAACCGAGAACCATGGAGAATAA 474 0.4831 MDTRRSEVGKRTLLRYKEEEEEEEEEEEEDEEEEEEMVGYGEEYGGRRKRAMTDLMSSKKGFKGGGSSSNMPPSCQVDGCDSDLSEAKQYHRRHKVCEFHAKAPSVHISGQQQRFCQQCSRFHELSEFDDSKRSCRRRLAGHNERRRKNNATENHGE 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241771g00004 157 MobiDBLite consensus disorder prediction 19 39 - -
Stsc241771g00004 157 ProSiteProfiles Zinc finger SBP-type profile. 72 149 IPR004333 GO:0003677
Stsc241771g00004 157 MobiDBLite consensus disorder prediction 138 157 - -
Stsc241771g00004 157 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 46 150 IPR044817 GO:0003677
Stsc241771g00004 157 MobiDBLite consensus disorder prediction 1 49 - -
Stsc241771g00004 157 FunFam Squamosa promoter-binding-like protein 14 66 136 - -
Stsc241771g00004 157 PIRSF SBP 4 157 IPR017238 GO:0003677|GO:0003700|GO:0009908
Stsc241771g00004 157 MobiDBLite consensus disorder prediction 1 18 - -
Stsc241771g00004 157 Pfam SBP domain 75 148 IPR004333 GO:0003677
Stsc241771g00004 157 Gene3D - 65 136 IPR036893 GO:0003677|GO:0005634
Stsc241771g00004 157 Coils Coil 9 43 - -
Stsc241771g00004 157 SUPERFAMILY SBT domain 73 151 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241771g00004 Stsc-Chr241771 29561 31224 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241771g00004 63 150 SBP-box Gene Family AT2G33810 69.318 3.37e-42 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Stsc241771g00004 SBP 1.7e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241771g00004 - - adu:127745653 210.69