Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241771g00003 ATGGAGGAGATTTCAACTGCAACCACAACTTCAACTTCAACTTCAGCTTCAGGGTACAAGGAATACGTGGCAGGCTTGATCGCTGGCGTTGCCACTGTTGCCATTGGCCACCCATTTGACACCGTCAAGGTGAAGCTGCAAAAGCACAACACAGAATGTCATACGGTTCGGTATAGAAGTGGATTGCATTGCACTGCCAGGATATTGAAGACTGAAGGAATCAAAGGACTATATAGAGGAGCAACATCATCTTTTTTGGGGATGGCTTGTGAAAGTTCACTTCTTTTTGGCATATATTCCCAGACAAAATTGGCTCTTCAGGGAGGTGTTCAAAGTGGTAAACCGCAGCCTCAAGTGATAATACCATCTGCAGCTTATGGCGGTGCCATCATCAGTTTTGTGTTATGTCCAACGGAGCTGGTAAAGTGTAGGATGCAGATTCAAGGGACTGACTCTTTGGTTCCAAAGTCGAGTAGATACAGTAGTTCTCTTGATTGTGCCCTTAAAACTGTGAAAAGTGAAGGGGTGACAGGAATTTTTCGCGGAGGTTTTACGACATTGCTTAGAGAATCAATAGGGAATGCTGTCTTTTTCAGCACATATGAATACGTGCGCTATCACTTGCATTCACATGCCAAAGCTGTTCCTTCCAATTACAACAACCTGGTTGATATTGGCATTGGGATTATTACTGGTGGTCTTGGTGGTGTGTCTTTTTGGTTGGCTGTTCTGCCCCTTGATGTGGCAAAGACTTTAATTCAGACAAACCCCGAAAGAAACGGTTCACGAAATCCTTTTCAGGTCCTGAGTTCGGTTTACAAGAGCGGTGGCTTGAAGGGTTGTTATACAGGTCTGGGGCCAACAGTAACCCGAGCATTCCCTGCTAATGCAGCCGCAATTGTGACCTGGGAGCTAGCAATGAAAATGTTAGGCATTAGGCATGAGTGA 948 0.4515 MEEISTATTTSTSTSASGYKEYVAGLIAGVATVAIGHPFDTVKVKLQKHNTECHTVRYRSGLHCTARILKTEGIKGLYRGATSSFLGMACESSLLFGIYSQTKLALQGGVQSGKPQPQVIIPSAAYGGAIISFVLCPTELVKCRMQIQGTDSLVPKSSRYSSSLDCALKTVKSEGVTGIFRGGFTTLLRESIGNAVFFSTYEYVRYHLHSHAKAVPSNYNNLVDIGIGIITGGLGGVSFWLAVLPLDVAKTLIQTNPERNGSRNPFQVLSSVYKSGGLKGCYTGLGPTVTRAFPANAAAIVTWELAMKMLGIRHE 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241771g00003 315 ProSiteProfiles Solute carrier (Solcar) repeat profile. 115 207 IPR018108 -
Stsc241771g00003 315 Gene3D Mitochondrial carrier domain 121 315 IPR023395 -
Stsc241771g00003 315 ProSiteProfiles Solute carrier (Solcar) repeat profile. 16 105 IPR018108 -
Stsc241771g00003 315 Gene3D Mitochondrial carrier domain 2 120 IPR023395 -
Stsc241771g00003 315 FunFam Mitochondrial amino acid carrier 190 314 - -
Stsc241771g00003 315 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 15 310 - -
Stsc241771g00003 315 SUPERFAMILY Mitochondrial carrier 18 304 IPR023395 -
Stsc241771g00003 315 FunFam Mitochondrial carrier protein 10 119 - -
Stsc241771g00003 315 Pfam Mitochondrial carrier protein 229 310 IPR018108 -
Stsc241771g00003 315 Pfam Mitochondrial carrier protein 19 107 IPR018108 -
Stsc241771g00003 315 Pfam Mitochondrial carrier protein 123 209 IPR018108 -
Stsc241771g00003 315 ProSiteProfiles Solute carrier (Solcar) repeat profile. 223 309 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241771g00003 Stsc-Chr241771 21080 25534 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241771g00003 36 310 Antiporters AT1G79900 31.449 3.04e-31 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241771g00003 K15109 - jre:109020136 489.96