Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241770g00005 ATGAAGGAAGGTGGTGAGAAGAGCTTGGATCCGCAGCTATGGCATGCTTGTGCTGGTTCCATGATTCAGATACCTCAAGTGAACTCCAAAGTGTTTTACTTTCCACAAGGGCATGCAGAACATGCTCAAACCGCCATTGATCTCACAACTCCTTCTTTGAGGGTTCCACCACTCATCCCTTGCAGGGTTTTATCAGTGAAATTCATGGCTGACCCTGAAACAGATGAAGTTTTCGCAAAGATAAAGCTTGTTCCATTGAAAAGTTCAGAGCTTGATCAAAACGACAGCGTCTTGGAGGGTGAAGTTGTTGTTGTGGAGAATCAAGAAAAGCCTGCATCTTTTGCAAAGACTTTGACCCAATCTGATGCTAACAATGGTGGGGGTTTCTCAGTGCCTCGTTACTGTGCAGAAACCATCTTCCCCCGGCTAGATTACTCGGCTGAGCCGCCGGTTCAGACGGTGGTGGCAAAGGATGTTCATGGTGAGCTATGGAAGTTTAGGCATATATATAGAGGTACACCAAGGAGGCACTTGCTTACTACTGGTTGGAGCACTTTTGTGAACCACAAGAAGCTTGTAGCTGGTGATTCTGTGGTGTTTCTGAGGGCTGAAAATGGTGATCTTTGTGTTGGGATTCGGAGGGCAAAAAGGGTAATTGGAATTGGTGGGAATGGTGGTGGTTGTGAGGGTTCATCCTTGTGGAGTTCAGCTTCTTCTGGTAATGGTAATAGTAATGGAGGGCCTTATGGAGCATTATCCATGTTCTTGAGAGAGGAGAACAACAAGCTTTTGAGAAATAATAATAGTGGAAGGTGCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGCTTCAAGGGTGAGAGCTGAAGATGTTGTGGAAGCTGTGTCAATGGCTGCAAGGAACCAACCATTTGAGGTTGTGTATTCTCCAAGGGCAAACACTCCTGAGTTCTGCATTAAGGCTTCTTCTGTGAGTTCTGCAATGAGGATCCAATGGTGTCCTGGCATGAGGTTCAAGATGCCCTTTGAGACTGAGGATTCTTCTAGAATCAGCTGGTTCATGGGAACTATTGCTTCGGTTCAGGTTGTTGATCCTATCCGCTGGCCGAATTCGCCATGGCGAATTCTTCAGGTTACTTGGGATGAACCTGATTTGCTACAAAATGTGAAGCGAGTTAGCCCGTGGTTGGTTGAATTGGTATCGAACATGCCAGTCATCAATCTCTCGCCATTCTCTCCACCGAGGAAGAAGCTGCGGTTTCCACAGAACCCAGACTTCCCCCATGACATTCAGTTCACAGCACTACCAACAACATTTCCAGGCAATCATATCGGGCCGAATAGCCCCTTGTGTTGTTTATCAGACAATGCTCCTGCAAGCATACAGGGAACCAGGCATGCTCAAATTGGAATCTCTCTTTCAGATTTCCACCTCAGCAATAAACTGCAGTTGGGGCTGCTTCCAACTAGTATCCATCGGCTCAATGTTCATAGTGGCAATTCGAACCGTGACATGACCAACCATGATAAGAGCAAAGAGAGCTTATCATGCTTGCTTACCATGGGAAAATCTAACAAGAGTTTGGAGAAATCTGAGAATAATAGTAATAGTGATGTTAAGAGACACCAGTTTTTTCTTTTCGGTCAGCCTATTCTCACCGAGCAACAAATCTCTCGAACCGGAAAAGACTCTCCGGATGAGACTAAGATCAACGAGAAGTGCTTCTTCGGCGAAGCTAAAATCGAAGTTTCGCAGCACATTCCACCAGGAAAAGCTTCTAATGCTGCCGAGTTCTCGTGGCAAATCGGCTTGGAAACTGGCCATTGTAAGGTTTTCTTGGAATCAGAAGATGTAGGAAGGACCTTAGACCTATCAAGCCTTGGTTCTTATGAAGAGCTCTATAGAAAATTGGCCACCATGTTTGATATGGAAAGATCTGAGATCCTCAACCATGTTCTTTACCGCGACGAAACAAGTGCTGTTAAGAAAATTGGAGAAGAACCCTTCAGTGAATTCATGAAGACAGCAAAGAGATTGACAATTCTTATGGATTCAGGCAGCAAAAATATTAAAAGGGCATGGATTACAGGGAGTCACAGTGGTGAACATGGAATTGATGCATCAAACAAAACTGGTCCTCTTAGTATATTTGTTTAA 2157 0.4469 MKEGGEKSLDPQLWHACAGSMIQIPQVNSKVFYFPQGHAEHAQTAIDLTTPSLRVPPLIPCRVLSVKFMADPETDEVFAKIKLVPLKSSELDQNDSVLEGEVVVVENQEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVVAKDVHGELWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSVVFLRAENGDLCVGIRRAKRVIGIGGNGGGCEGSSLWSSASSGNGNSNGGPYGALSMFLREENNKLLRNNNSGRCSSSSSSSSSSASRVRAEDVVEAVSMAARNQPFEVVYSPRANTPEFCIKASSVSSAMRIQWCPGMRFKMPFETEDSSRISWFMGTIASVQVVDPIRWPNSPWRILQVTWDEPDLLQNVKRVSPWLVELVSNMPVINLSPFSPPRKKLRFPQNPDFPHDIQFTALPTTFPGNHIGPNSPLCCLSDNAPASIQGTRHAQIGISLSDFHLSNKLQLGLLPTSIHRLNVHSGNSNRDMTNHDKSKESLSCLLTMGKSNKSLEKSENNSNSDVKRHQFFLFGQPILTEQQISRTGKDSPDETKINEKCFFGEAKIEVSQHIPPGKASNAAEFSWQIGLETGHCKVFLESEDVGRTLDLSSLGSYEELYRKLATMFDMERSEILNHVLYRDETSAVKKIGEEPFSEFMKTAKRLTILMDSGSKNIKRAWITGSHSGEHGIDASNKTGPLSIFV 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241770g00005 718 CDD B3_DNA 113 214 IPR003340 GO:0003677
Stsc241770g00005 718 SUPERFAMILY DNA-binding pseudobarrel domain 105 219 IPR015300 -
Stsc241770g00005 718 FunFam Auxin response factor 332 405 - -
Stsc241770g00005 718 SMART B3_2 114 216 IPR003340 GO:0003677
Stsc241770g00005 718 Gene3D - 332 404 - -
Stsc241770g00005 718 FunFam Auxin response factor 112 216 - -
Stsc241770g00005 718 Gene3D - 604 691 - -
Stsc241770g00005 718 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 7 685 IPR044835 GO:0003677|GO:0006355|GO:0009725
Stsc241770g00005 718 ProSiteProfiles PB1 domain profile. 606 686 IPR000270 GO:0005515
Stsc241770g00005 718 ProSiteProfiles B3 DNA-binding domain profile. 114 216 IPR003340 GO:0003677
Stsc241770g00005 718 Pfam B3 DNA binding domain 114 215 IPR003340 GO:0003677
Stsc241770g00005 718 Gene3D - 112 216 IPR015300 -
Stsc241770g00005 718 Pfam Auxin response factor 294 377 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241770g00005 Stsc-Chr241770 29128 32191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241770g00005 6 692 B3 DNA Binding Superfamily AT2G28350 56.745 0.0 729
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Stsc241770g00005 B3 3e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241770g00005 - - gmx:100814686 982.63