Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241770g00001 ATGAAGGATATTTTGTTTTTGGACAACAATTTGAATGGGGTGTCTGATGAAGCTTTTGATGTGGTGGAATTCTTTAATTTCAAATTAGAAGATGTGGAAGATGATGTTGTGGAGGAAGATTGGGTTGCTCAGTTTAAACTACTCGAAGAGCCATCTCTTGGTGTGTTTCCGGTATCAACATCCGGATTATGTGACAAAACTGAGAATGAGAATCCAAAACTTGGGAGGAGTATCTCTACTCCTCTGGCGGAGACTGCTCGGCCGACATGCGGCAAAACTATTCGGAACCAGAATGTCTCTTTTAATGGGAAAACGGTGCCCAAGGGCCAAACCTACAGCCCGGTGTCTGTCTTCGAAAGCAGTAGTTCCTCCTCGGTTGAGAACTCCAACTTTGATCTACCTATCATACCAGAAAAGCGCCCTCGAGGCAAACGCCGGCCCCGGCCGCTCTCAAGCTGCCGCCGGCTATTAGCTGATCCATTTAACACCCCAAAATATGAGGCAAACGGTTTCTCCGGATCAAATTTACAAACACAACATGGTGGTAAATCAATAAGCAGTCTCAAAAAGAAGCAGAGGAATAAGGATCTTCCCCTGCCTTCAGATCATACTGAGAAGAAGAGATCTGCATCACAAGGGTCAGTTACCCACCGAAAATGCATGCATTGTGAGGTGACATCGACGCCGCAGTGGAGAGAAGGACCTATGGGTCCAAAGACACTTTGCAATGCTTGTGGGGTTCGGTATAGGTCTGGCCGGCTCTTCCCTGAGTATCGGCCTGCAGCTAGCCCTACGTTTGTAGCATCGTTGCACTCGAACTCTCACAGGAAGGTCATCGAAATGAGAAGCCAAACTGCGAAAGAGACTCTTAAGGATTCTTGA 882 0.4705 MKDILFLDNNLNGVSDEAFDVVEFFNFKLEDVEDDVVEEDWVAQFKLLEEPSLGVFPVSTSGLCDKTENENPKLGRSISTPLAETARPTCGKTIRNQNVSFNGKTVPKGQTYSPVSVFESSSSSSVENSNFDLPIIPEKRPRGKRRPRPLSSCRRLLADPFNTPKYEANGFSGSNLQTQHGGKSISSLKKKQRNKDLPLPSDHTEKKRSASQGSVTHRKCMHCEVTSTPQWREGPMGPKTLCNACGVRYRSGRLFPEYRPAASPTFVASLHSNSHRKVIEMRSQTAKETLKDS 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241770g00001 293 ProSitePatterns GATA-type zinc finger domain. 220 245 IPR000679 GO:0006355|GO:0043565
Stsc241770g00001 293 FunFam GATA transcription factor 209 293 - -
Stsc241770g00001 293 ProSiteProfiles GATA-type zinc finger domain profile. 214 250 IPR000679 GO:0006355|GO:0043565
Stsc241770g00001 293 Gene3D - 213 264 IPR013088 GO:0006355|GO:0008270
Stsc241770g00001 293 PANTHER GATA TRANSCRIPTION FACTOR 33 286 - -
Stsc241770g00001 293 MobiDBLite consensus disorder prediction 120 216 - -
Stsc241770g00001 293 MobiDBLite consensus disorder prediction 167 185 - -
Stsc241770g00001 293 MobiDBLite consensus disorder prediction 189 212 - -
Stsc241770g00001 293 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 217 277 - -
Stsc241770g00001 293 SMART GATA_3 214 264 IPR000679 GO:0006355|GO:0043565
Stsc241770g00001 293 CDD ZnF_GATA 219 266 IPR000679 GO:0006355|GO:0043565
Stsc241770g00001 293 Pfam GATA zinc finger 220 253 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241770g00001 Stsc-Chr241770 3999 7080 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241770g00001 8 284 C2C2-Gata Transcription Factor Family AT1G08000 40.484 1.06e-46 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Stsc241770g00001 GATA 6.9e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241770g00001 - - gmx:100781869 281.567