Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241767g00013 ATGATGAAAGCAATCCAATTCCAAACGCCAAGGTTGGACTATGGCACATTCAATATCACAAAATTGAAGCATTCCATTGGAGGAGACTTCCAGATACCATCATCTTCATCATCATTCACTAAACCAATAATCTCCTGCTGCAGTGTGGTTCAATCTCACCACCGCAATTTCACAGTCTCATACCTCATTGACTCATGTGGTCTCTCTCCAGACACTGCTGCTCTTGCTTCCCAAAAGCTTCACCTTCCTTCAGCTGAAAGACCAGACTCTGTTCTTACCCTTCTCAGGGACCATGGTTTCACAGATACCCAGATTTCAAACCTCATCAGAAAGCGCCCATTGCTTCTTTTAGCAAACCCAGATATCCTCCTGCCAAAGTTTCAATTTTTCCTCTCCATTGGGATTTCCAATACCAACCTGGCAAGAACCCTAACTGCTGACCCAACCCTTTTGACCCGGAGCTTGGAGAAACAGATCATACCCTCTTACAATTTCCTCAAGAGTGTGTTGATTTCTGATGAAAAGGTTGCAGCTTCATTGAAGCGCACATCTTGGGTCTTCCTTGAGGATCACAAGAAGAACCTCGTACCAAACCTCAATCTCCTCAAAGAGATGGATGTTCCTGAATCATGTGTTATGCTGTTGCTGACTCATTTTCCGGAGGCATTGATGCAGAAAAAGGAGAACTTTGCAAAGCTATCTAAGGAGATTGAGGGAATGGGGTTTAATCCAAAAAAGACAACTTTTGTGTTGGCCATTCATGTGCTCTCAGGTGAGGGTAACAAATCCATATATAACCGCTGTTACGAGGTTTATCAGAGGTGGGGTTGGTCAGATGATGACATCCTTATGGCATTCAAGAAGCACCCTCATTGTATGATACTTTCAGAGGATAAGATAATGAAGGCAATGGATTACTTGGTGAACAAGATGGGTTGGCCTTCAGGGATGATTGTTAGGTGCCCAGTGGTGTTGTTTTTCAGCTTGGAGAAGAGGATTAAGCCCAGGTGCTCTGTTGCTAAGGTTTTGTTGATGAAGGGATTGATTAAGAGGAAGTTGAGCTTGTCCACTTTGCTGTTGCCTGATGAGGACAGTTTCTTGGAGAAGTATGTGATCAAGTATGAGCTGCAGGTGCCTCAGTTGTGGAGTGTGTATCAGCAGCAGTTGGATTTTATGAGTGTGATTTGA 1188 0.4377 MMKAIQFQTPRLDYGTFNITKLKHSIGGDFQIPSSSSSFTKPIISCCSVVQSHHRNFTVSYLIDSCGLSPDTAALASQKLHLPSAERPDSVLTLLRDHGFTDTQISNLIRKRPLLLLANPDILLPKFQFFLSIGISNTNLARTLTADPTLLTRSLEKQIIPSYNFLKSVLISDEKVAASLKRTSWVFLEDHKKNLVPNLNLLKEMDVPESCVMLLLTHFPEALMQKKENFAKLSKEIEGMGFNPKKTTFVLAIHVLSGEGNKSIYNRCYEVYQRWGWSDDDILMAFKKHPHCMILSEDKIMKAMDYLVNKMGWPSGMIVRCPVVLFFSLEKRIKPRCSVAKVLLMKGLIKRKLSLSTLLLPDEDSFLEKYVIKYELQVPQLWSVYQQQLDFMSVI 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241767g00013 395 Gene3D Transcription termination factor 3, mitochondrial 148 389 IPR038538 -
Stsc241767g00013 395 PANTHER CGI-12 PROTEIN-RELATED 55 374 IPR003690 GO:0003690|GO:0006355
Stsc241767g00013 395 SMART mt_12 315 346 IPR003690 GO:0003690|GO:0006355
Stsc241767g00013 395 SMART mt_12 141 172 IPR003690 GO:0003690|GO:0006355
Stsc241767g00013 395 SMART mt_12 106 136 IPR003690 GO:0003690|GO:0006355
Stsc241767g00013 395 SMART mt_12 177 208 IPR003690 GO:0003690|GO:0006355
Stsc241767g00013 395 SMART mt_12 283 314 IPR003690 GO:0003690|GO:0006355
Stsc241767g00013 395 Pfam mTERF 220 366 IPR003690 GO:0003690|GO:0006355
Stsc241767g00013 395 Pfam mTERF 92 243 IPR003690 GO:0003690|GO:0006355
Stsc241767g00013 395 FunFam Mitochondrial transcription termination factor-like 155 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241767g00013 Stsc-Chr241767 40402 41923 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Stsc241767g00013 mTERF 5.8e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241767g00013 K15031 - qsu:112019279 479.559