Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241766g00009 ATGGATCATAGAAGTGGAGGAGGAGGAATGGATATGCCAATAATGCATGAGAGTGATAGATATGAGTTAGTGAGAGATATTGGTTCTGGAAACTTCGGAGTTGCAAGGCTTATGAGGGATAAGCACACCGATCAACTTGTTGCTGTCAAGTATATTGAGAGGGGTGAAAAGATTGATGAAAATGTGCAAAGAGAAATTATAAATCACAGATCACTGAGGCATCCCAATATTGTGAGATTCAAGGAGGTTATATTGACCCCAACACATTTGGCTATTGTCATGGAATATGCTTCTGGAGGAGAGCTATTCGAGCGAATATGCAACGCAGGGCGCTTTAGCGAAGACGAGGCACGTTTCTTCTTCCAACAACTTATATCTGGGGTTAGCTACTGTCATGCAATGCAAGTATGTCATCGTGATTTGAAGTTGGAAAATACACTGTTGGATGGTAGTCCAGCTCCACGCTTGAAGATTTGTGATTTTGGTTATTCAAAGTCTTCAGTTCTCCATTCACAACCAAAATCCACAGTTGGCACCCCTGCATACATTGCTCCTGAAGTTTTGCTTAAGAAGGAATATGATGGCAAGATTGCAGATGTTTGGTCTTGTGGGGTAACCTTATATGTGATGTTGGTTGGTGCTTATCCTTTTGAGGATCCAGAGGAACCTAAAAATTTCCGAAAAACAATACATAGGATTTTAAATGTTCAATACTCAATTCCTGATTATGTTCATATATCCCCTGAGTGCCGCCATTTGATCTCAAGGATTTTTGTTGCTGATCCTGCTCAGAGAATAAGTATACCTGAGATCAAAAACCATGAGTGGTTCTTTAAGAATCTACCAGCTGATCTCATGGATGGGGACACAATGAGCAACCAGTATGAGGAGCCGGATCAACCGACGCAAAGTATTGAAGAGATCATGCAGATAATATCCGAGGCCATGATTCCTCCAGCCGGAAGCCAGTCCCTGAACCAGTACCTCACCGGAAGCTTGGACATCGACGACGACATGGACGAGGATCTAGACAGTGATCCTGACCTTGACCTTGATAGCAGTGGAGAAATTGTGTATGCTATGTAA 1086 0.4245 MDHRSGGGGMDMPIMHESDRYELVRDIGSGNFGVARLMRDKHTDQLVAVKYIERGEKIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPKNFRKTIHRILNVQYSIPDYVHISPECRHLISRIFVADPAQRISIPEIKNHEWFFKNLPADLMDGDTMSNQYEEPDQPTQSIEEIMQIISEAMIPPAGSQSLNQYLTGSLDIDDDMDEDLDSDPDLDLDSSGEIVYAM 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241766g00009 361 Gene3D Phosphorylase Kinase; domain 1 1 96 - -
Stsc241766g00009 361 SMART serkin_6 21 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241766g00009 361 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Stsc241766g00009 361 PANTHER SERINE/THREONINE KINASE 20 307 - -
Stsc241766g00009 361 Pfam Protein kinase domain 21 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241766g00009 361 Gene3D Transferase(Phosphotransferase) domain 1 97 285 - -
Stsc241766g00009 361 SUPERFAMILY Protein kinase-like (PK-like) 15 319 IPR011009 -
Stsc241766g00009 361 FunFam Serine/threonine-protein kinase SRK2E 12 96 - -
Stsc241766g00009 361 FunFam Serine/threonine-protein kinase SRK2E 97 285 - -
Stsc241766g00009 361 CDD STKc_SnRK2-3 20 276 - -
Stsc241766g00009 361 ProSiteProfiles Protein kinase domain profile. 21 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241766g00009 361 ProSitePatterns Protein kinases ATP-binding region signature. 27 50 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241766g00009 Stsc-Chr241766 61883 70212 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241766g00009 20 281 CBL-interacting serine-threonine protein kinases AT5G25110 44.689 8.61e-69 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Stsc241766g00009 Pkinase 2e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241766g00009 K14498 - qsu:112032862 649.047