Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241766g00008 ATGGGTTCGGTTCCTGCAGAACTGAGCTTACAAATTAGAACACCAGAGGCACCGCCACCACCGCCACCATCATCACGGAGTTTCATTCCTAAAACCATAACTGATTTCATCTCCGGTCTTTCAACATCGGAAATCACCGCATCTGAGAAGCAATCCACGATCAACGATTTCCTCTCCCACTTGGAAGATGAATACAACAAGATCCACGCCTTCAAGCGCGAGCTCCCTCTCTCCATGCTCCTTCTCGGCGATGCAATTGTGGAACTGAAGGAGCAATTGGCGAAATGCAGTGAAGGTGCGTGTAAATCTCAGCCAGTGCTGGAAGAGTTCATTCCGTTGAAGAAAGAGTTCGATCATAGCGAAGACGATGAAGAACATGTTAATAATGATAATAACAATAACAATAATCGGAAGGAGAAAGAATGCAGAGATAAGAAGAGTTGGTTGAGTTCCGTTCAGCTCTGGAACACTTCTTCTTCAATCTTACTTAACAATAACAATAACAATAATAATGCCTTTGATAATAATCACAAACACCATCACCAAAATCATCATCATAAATTCGGAACAAAGAAGAATCAGGAATGTGTAGTTGAGGATCCTTTTCAATCTCGAAGCAATGTTAGAAATAATAATGGAGGAAGAGGGTTTATGCCTTTTACTTCATACTCTTCTTGTTCAGTGCCAGTGACTACTGTGGCGCTCTCTGCATCAAAAGAAGAGAAGGAAGATATTGTTGCTATTAATAGGCTTCCTCTCTTGACCCCTGCTGCTGGTGTTGGTGGAGTCAAGACTCTTAGGGAAGGTTCTGGTTCCAGTGGATCCAGAACCAGCTCCAACAACAGGCCGGTTTCGTCGTCTTCTCCTCCGGCAGCCGCTGTGCACCGCAGCACTGCCATGATGCCTCTTCAGCCTCAGCAGACTGCTAGGAAGCAGAGGAGGTGCTGGTCCCCGGAGCTGCACAGGAGATTTGTCAATGCGTTGCAGAAGCTTGGTGGTTCTCAAGTGGCAACACCCAAGCAGATTAGAGAACTCATGCAGGTTGATGGACTCACCAACGATGAAGTGAAGAGCCATTTACAAAAATACCGGCTTCATACAAGAAGAGTTCCATCTGGAAGTGGTAACCATAATCATAATCAATCTGTGGTAGTTCTTGGAGGATTGTGGATGTCACAAGGGCAAGATCAGTGTAATGACTCATCAAAGGGGAGTAGCTCTGGTTCCGGTTCACCGCAGAGCCCCCTACATTTAGCCACCGGATCCAGGGGAGGAATGTCCCCGACTGAGGGTGACGACAGCATGGAAGATGATGAAGATGAAAAATCAGAGAGCTATAGCTGGAAAAGCCACACTCATCACAAACAAGTAAAAGTTGTTGATGTATAG 1389 0.4557 MGSVPAELSLQIRTPEAPPPPPPSSRSFIPKTITDFISGLSTSEITASEKQSTINDFLSHLEDEYNKIHAFKRELPLSMLLLGDAIVELKEQLAKCSEGACKSQPVLEEFIPLKKEFDHSEDDEEHVNNDNNNNNNRKEKECRDKKSWLSSVQLWNTSSSILLNNNNNNNNAFDNNHKHHHQNHHHKFGTKKNQECVVEDPFQSRSNVRNNNGGRGFMPFTSYSSCSVPVTTVALSASKEEKEDIVAINRLPLLTPAAGVGGVKTLREGSGSSGSRTSSNNRPVSSSSPPAAAVHRSTAMMPLQPQQTARKQRRCWSPELHRRFVNALQKLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLHTRRVPSGSGNHNHNQSVVVLGGLWMSQGQDQCNDSSKGSSSGSGSPQSPLHLATGSRGGMSPTEGDDSMEDDEDEKSESYSWKSHTHHKQVKVVDV 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241766g00008 462 MobiDBLite consensus disorder prediction 261 306 - -
Stsc241766g00008 462 MobiDBLite consensus disorder prediction 393 462 - -
Stsc241766g00008 462 MobiDBLite consensus disorder prediction 268 293 - -
Stsc241766g00008 462 MobiDBLite consensus disorder prediction 118 144 - -
Stsc241766g00008 462 Gene3D - 310 368 - -
Stsc241766g00008 462 MobiDBLite consensus disorder prediction 393 420 - -
Stsc241766g00008 462 MobiDBLite consensus disorder prediction 442 462 - -
Stsc241766g00008 462 Pfam Myb-like DNA-binding domain 313 364 IPR001005 -
Stsc241766g00008 462 FunFam Myb family transcription factor 310 368 - -
Stsc241766g00008 462 MobiDBLite consensus disorder prediction 1 28 - -
Stsc241766g00008 462 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 308 368 IPR017930 -
Stsc241766g00008 462 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 42 450 IPR044787 GO:0003700|GO:0006355
Stsc241766g00008 462 NCBIfam myb-like DNA-binding domain, SHAQKYF class 311 366 IPR006447 GO:0003677
Stsc241766g00008 462 SUPERFAMILY Homeodomain-like 308 369 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241766g00008 Stsc-Chr241766 36889 40001 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241766g00008 54 391 G2-like Transcription Factor Family AT2G03500 35.897 1.13e-48 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Stsc241766g00008 Myb_DNA-binding 4.4e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241766g00008 - - adu:107470076 662.529