Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241766g00003 ATGATGGGGAGAAGAACAAGGTGCTTCCTGGACATAAGCATAGGAGATGAGCTTGAAGGAAGGATCCTTGTGGAGCTCTTCAACGACGTCGTTCCTAAAACTGCTGAGAATTTCAGAGCTCTCTGCACCGGTCACAAAGGCATTGCTCCCAACACCTCCGTCCCTCTTCATTTCAAGGGGTCATGCTTTCATCGTGTTATTAAGGGATTTATGATCCAAGGAGGGGATATTTCTGCTGGAGATGGTACTGGAGGAGAATCTATATATGGACTGAAATTTGAAGATGAGAATTTTGAGTTGAAGCATGAAAGGAAAGGGATGTTATCAATGGCAAACTCTGGTCCCAATACGAATGGCTCTCAGTTCTTTATCACCACTACTCGAACTTCTCATCTAGATGGTAAGCATGTTGTATTTGGGAAAGTAGTTAAAGGAATGGGAGTGGTCCGTTCGATCGAGCATGTTACTACCGGAGACGATGACCGTCCCACTCTTGATGTGAAAATTGTGGATTGTGGAGAGATTCCTGAAGGAGAAGATGATGGAATCTCCAACTTTTTCAAAGATGGTGATACTTATCCTGATTGGCCAGCAGATCTTGATGAGAGTCCTAATGAACTTGAATGGTGGATGGAATCTGTTAACAACATTAAAACTTTTGGTAATGATTATTACAAGAAACAAGATTACAAAATGGCTCAAAAGAAGTATCGAAAGGCTTTGCGCTACCTCGATATTTGTTGGGAAAAAGAGGGGATTGATGAAGAGAAAAGTTCTGGTTTGAGAAAAACAAAGTCTCAGATTTTCACAAACAGCTCTGCTTGTAAATTGAAATTAGGTGATCTGAAAGGAGCATTATTGGATACCGAATTTGCAGTGCGAGACGGAGAGAACAATGCCAAAGCTTTGTTCCGCCAAGGTCAGGTTGGTATCCCAATTGGAGAGATCTTTGTCACAATTTAG 963 0.4174 MMGRRTRCFLDISIGDELEGRILVELFNDVVPKTAENFRALCTGHKGIAPNTSVPLHFKGSCFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANSGPNTNGSQFFITTTRTSHLDGKHVVFGKVVKGMGVVRSIEHVTTGDDDRPTLDVKIVDCGEIPEGEDDGISNFFKDGDTYPDWPADLDESPNELEWWMESVNNIKTFGNDYYKKQDYKMAQKKYRKALRYLDICWEKEGIDEEKSSGLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAVRDGENNAKALFRQGQVGIPIGEIFVTI 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241766g00003 320 Gene3D - 2 181 IPR029000 -
Stsc241766g00003 320 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 10 173 IPR002130 GO:0000413|GO:0003755
Stsc241766g00003 320 SUPERFAMILY Cyclophilin-like 5 177 IPR029000 -
Stsc241766g00003 320 FunFam Peptidyl-prolyl cis-trans isomerase D 1 180 - -
Stsc241766g00003 320 Gene3D Tetratricopeptide repeat domain 208 316 IPR011990 GO:0005515
Stsc241766g00003 320 CDD cyclophilin_ABH_like 7 173 - -
Stsc241766g00003 320 SUPERFAMILY TPR-like 209 309 IPR011990 GO:0005515
Stsc241766g00003 320 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 58 75 IPR020892 GO:0003755|GO:0006457
Stsc241766g00003 320 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 106 121 IPR002130 GO:0000413|GO:0003755
Stsc241766g00003 320 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 134 149 IPR002130 GO:0000413|GO:0003755
Stsc241766g00003 320 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 121 133 IPR002130 GO:0000413|GO:0003755
Stsc241766g00003 320 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 26 41 IPR002130 GO:0000413|GO:0003755
Stsc241766g00003 320 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 63 75 IPR002130 GO:0000413|GO:0003755
Stsc241766g00003 320 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 9 174 IPR002130 GO:0000413|GO:0003755
Stsc241766g00003 320 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 7 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241766g00003 Stsc-Chr241766 8188 10921 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241766g00003 19 172 U-box Gene Family AT5G67530 44.516 5.40e-35 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241766g00003 K05864 - gmx:100804110 566.229