Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241766g00002 ATGATGGGGAGAAGAACAAGGTGCTTCCTGGACATAAGCATAGGAGATGAGCTTGAAGGAAGGATCCTTGTGGAGCTCTTCAACGACGTCGTTCCTAAAACTGCTGAGAATTTCAGAGCTCTCTGCACCGGTCACAAAGGCATTGCTCCCAACACCTCCGTCCCTCTTCATTTCAAGGGGTCATGCTTTCATCGTGTTATTAAGGGATTTATGATCCAAGGAGGGGATATTTCTGCTGGAGATGGTACTGGAGGAGAATCTATATATGGACTGAAATTTGAAGATGAGAATTTTGAGTTGAAGCATGAAAGGAAAGGGATGTTATCAATGGCAAACTCTGGTCCCAATACGAATGGCTCTCAGTTCTTTATCACCACTACTCGAACTTCTCATCTAGATGGTAAGCATGTTGTATTTGGGAAAGTAGTTAAAGGAATGGGAGTGGTCCGTTCGATCGAGCATGTTACTACCGGAGACGATGACCGTCCCACTCTTGATGTGAAAATTGTGGATTGTGGAGAGATTCCTGAAGGAGAAGATGATGGAATCTCCAACTTTTTCAAAGATGGTGATACTTATCCTGATTGGCCAGCAGATCTTGATGAGAGTCCTAATGAACTTGAATGGTGGATGGAATCTGTTAACAACATTAAAACTTTTGGTAATGATTATTACAAGAAACAAGATTACAAAATGGCTCAAAAGAAGTATCGAAAGGCTTTGCGCTACCTCGATATTTGTTGGGAAAAAGAGGGGATTGATGAAGAGAAAAGTTCTGGTTTGAGAAAAACAAAGTCTCAGATTTTCACAAACAGCTCTGCTTGTAAATTGAAATTAGGTGATCTGAAAGGAGCATTATTGGATACCGAATTTGCAGTGCGAGACGGAGAGAACAATGCCAAAGCTTTGTTCCGCCAAGGTCAGGCATACATGGCTCTCCATGACATTGATGCTGCAGTTGAAAGCTTTAAGAAGGCATTGACCTTGGAGCCAAATGATGCTGGAATAAAAAAGGAACTTGCTGCTGCAAGGAAGAAGATAGCCGATAGGCGCGATAAAGAGAAAAAGGCATACAGCAAGATGTTCCAATAA 1092 0.4203 MMGRRTRCFLDISIGDELEGRILVELFNDVVPKTAENFRALCTGHKGIAPNTSVPLHFKGSCFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANSGPNTNGSQFFITTTRTSHLDGKHVVFGKVVKGMGVVRSIEHVTTGDDDRPTLDVKIVDCGEIPEGEDDGISNFFKDGDTYPDWPADLDESPNELEWWMESVNNIKTFGNDYYKKQDYKMAQKKYRKALRYLDICWEKEGIDEEKSSGLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAVRDGENNAKALFRQGQAYMALHDIDAAVESFKKALTLEPNDAGIKKELAAARKKIADRRDKEKKAYSKMFQ 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241766g00002 363 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 7 175 - -
Stsc241766g00002 363 CDD cyclophilin_ABH_like 7 173 - -
Stsc241766g00002 363 Pfam Tetratricopeptide repeat 300 333 IPR001440 GO:0005515
Stsc241766g00002 363 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 58 75 IPR020892 GO:0003755|GO:0006457
Stsc241766g00002 363 FunFam peptidyl-prolyl cis-trans isomerase D 212 363 - -
Stsc241766g00002 363 FunFam Peptidyl-prolyl cis-trans isomerase D 1 180 - -
Stsc241766g00002 363 SUPERFAMILY Cyclophilin-like 5 177 IPR029000 -
Stsc241766g00002 363 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 63 75 IPR002130 GO:0000413|GO:0003755
Stsc241766g00002 363 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 106 121 IPR002130 GO:0000413|GO:0003755
Stsc241766g00002 363 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 26 41 IPR002130 GO:0000413|GO:0003755
Stsc241766g00002 363 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 121 133 IPR002130 GO:0000413|GO:0003755
Stsc241766g00002 363 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 134 149 IPR002130 GO:0000413|GO:0003755
Stsc241766g00002 363 SMART tpr_5 214 247 IPR019734 GO:0005515
Stsc241766g00002 363 SMART tpr_5 300 333 IPR019734 GO:0005515
Stsc241766g00002 363 SUPERFAMILY TPR-like 210 361 IPR011990 GO:0005515
Stsc241766g00002 363 Gene3D Tetratricopeptide repeat domain 214 363 IPR011990 GO:0005515
Stsc241766g00002 363 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 9 174 IPR002130 GO:0000413|GO:0003755
Stsc241766g00002 363 ProSiteProfiles TPR repeat region circular profile. 300 333 - -
Stsc241766g00002 363 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 10 173 IPR002130 GO:0000413|GO:0003755
Stsc241766g00002 363 Gene3D - 2 181 IPR029000 -
Stsc241766g00002 363 ProSiteProfiles TPR repeat profile. 300 333 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241766g00002 Stsc-Chr241766 7519 10921 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241766g00002 19 172 U-box Gene Family AT5G67530 44.516 4.64e-35 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241766g00002 K05864 - gmx:100804110 662.529