Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241764g00009 ATGGGTTGGTTAACCAAGTTGCTTAAGGGATCCAACCATAAATCTTCCAGAGGAGAACATCGTGGGAAATATGACAATTCCAGGGATGATTTGACAGATATTGAGAGACAAGAAATTGACCGTGCAATTGCACTCTCTCTTTCGGAGGAAGATCAGAAAGGGAAAAAAGTTATTGAGGATGACTCTCAATCCTCAGACGATGAACAACTATGTGAACTAACTGAGGATGAAGATGAATATCACGGTGAAGTTAAACAACATGAAGAACTAAGTGAACATCACAAGGAAGAAGATGAATCTGTTGGTGAAGCTGAGGAAGAGGAAGAGGAAGACGACCATCTTAAAAAAATTCAACAGGATAAAGACAAGCATCTCGCCGAAGCTCAGCTTGAGGAAGATGAACAACTGGCCAGAGCACTTCAAGAAAGTTTGAACAATGATTCAGATAGAGCAGAAAGGGATTCTTTATTTCAACCATTTCCACACCTCTTCCCACCTGTATATAGAACCTGTGCTGGCTGCAATTCAGAGATTGGCCATGGTAGATTTTTGAGTTGCATGGGAGGTGTCTGGCATCCAGAATGTTTCTGTTGCCATGCTTGTAATTTGCCAATCACTGATTATGAGTTTTCCATGTCTGGAAATCATCGTTACCATAAATCTTGCTACAAGGAACTGCATCACCCAAGATGTGATGTTTGCAAGAACTTCATCCCACCCAATTCAGCTGGACTCATTGAGTATAGAGCACATCCTTTCTGGATGCAGAAATACTGTCCTTCACACGAGCGTGATAGAACTCCTCGTTGTTGTAGCTGTGAAAGAATGGAGTATCTTTTGCTCGATGATGGTCGAAAGTTATGCCTAGAGTGTCTAGACTCGGCTATTATGGATACGCATGAATGCCAGCCTCTCTATCTTGAAATACAAGAGTTCTATGAAGGTTTAAATATGAAAATAGAACAACAAGTTCCAATGCTTTTAGTTGAGAGACAGGCACTAAATGAGGCCATGGAGGGAGAAAAGAATGGTCATCACCACTTACCTGAAACAAGAGGACTTTGCTTGTCAGAGGAGCAAACTGTTGCCACTATTTTAAGGAGACCAAGGATAGGGGCAGGATACCGAGTCATAGATATGATAACTGAGCCTTACAGGCTGATCCGCCATTGCGAAGTGACAGCCATACTTGTTTTGTATGGCCTTCCTAGGCTATTGACGGGGTCAATCCTGGCTCATGAGATGATGCATGCTTGGCTTAGGCTTAAAGGCTATGGGAATTTAAGGCCAGAAGTTGAAGAAGGAATTTGCCAAGTGCTAGCTCACATGTGGCTAGATTCAGAGATCTACGCGGGTTCAGGAAGCGACAGTGCATCATCGGCATCATCATCATCCTCATCCTCATCCTCGCCTTCCTCTTCTACATCATCAAAGAAGGGTAAACGGTCTGACTTTGAGAAGAAACTTGGCGAGTTTTTCAAACACCAGATTGAGTCGGATCGTTCGTCGGCTTATGGAGATGGATTCAGAGAGGGGAACCAGGCTGTGCTCAAGTATGGTTTAAGAAGTACCCTTGATCATATTCGACTCACAGGAAGTTTCCCATATTGA 1611 0.4314 MGWLTKLLKGSNHKSSRGEHRGKYDNSRDDLTDIERQEIDRAIALSLSEEDQKGKKVIEDDSQSSDDEQLCELTEDEDEYHGEVKQHEELSEHHKEEDESVGEAEEEEEEDDHLKKIQQDKDKHLAEAQLEEDEQLARALQESLNNDSDRAERDSLFQPFPHLFPPVYRTCAGCNSEIGHGRFLSCMGGVWHPECFCCHACNLPITDYEFSMSGNHRYHKSCYKELHHPRCDVCKNFIPPNSAGLIEYRAHPFWMQKYCPSHERDRTPRCCSCERMEYLLLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKIEQQVPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVATILRRPRIGAGYRVIDMITEPYRLIRHCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYGNLRPEVEEGICQVLAHMWLDSEIYAGSGSDSASSASSSSSSSSSPSSSTSSKKGKRSDFEKKLGEFFKHQIESDRSSAYGDGFREGNQAVLKYGLRSTLDHIRLTGSFPY 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241764g00009 536 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 198 256 - -
Stsc241764g00009 536 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 131 150 IPR003903 -
Stsc241764g00009 536 MobiDBLite consensus disorder prediction 1 32 - -
Stsc241764g00009 536 MobiDBLite consensus disorder prediction 456 478 - -
Stsc241764g00009 536 MobiDBLite consensus disorder prediction 78 100 - -
Stsc241764g00009 536 SMART uim 34 53 IPR003903 -
Stsc241764g00009 536 SMART uim 131 150 IPR003903 -
Stsc241764g00009 536 MobiDBLite consensus disorder prediction 12 32 - -
Stsc241764g00009 536 MobiDBLite consensus disorder prediction 45 63 - -
Stsc241764g00009 536 PANTHER PROTEIN DA1-RELATED 2 78 536 IPR045218 -
Stsc241764g00009 536 Coils Coil 114 150 - -
Stsc241764g00009 536 MobiDBLite consensus disorder prediction 456 482 - -
Stsc241764g00009 536 ProSitePatterns LIM zinc-binding domain signature. 171 205 IPR001781 -
Stsc241764g00009 536 Pfam Protein DA1 315 531 IPR022087 -
Stsc241764g00009 536 Coils Coil 87 107 - -
Stsc241764g00009 536 SMART lim_4 170 222 IPR001781 -
Stsc241764g00009 536 FunFam Protein DA1-related 1 165 224 - -
Stsc241764g00009 536 MobiDBLite consensus disorder prediction 45 116 - -
Stsc241764g00009 536 Pfam LIM domain 171 225 IPR001781 -
Stsc241764g00009 536 CDD LIM_DA1 171 223 - -
Stsc241764g00009 536 Gene3D Cysteine Rich Protein 168 230 - -
Stsc241764g00009 536 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 165 196 - -
Stsc241764g00009 536 ProSiteProfiles LIM domain profile. 169 229 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241764g00009 Stsc-Chr241764 58751 64186 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc241764g00009 DA1-like 1.9e-106 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241764g00009 - - gmx:100806605 846.269