Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241761g00009 ATGGAGCTTCGTTCTCATCGTCGCCTCTCCCAAACCGCACTTCCTGGACCAGGGAGGGGGAAGCAACCGAGGGATACCACTGAAGGAGTTGAAACTAACGATATGGATGGAGATGCTTATGTAGTATCTTCGGATTCCAATTTTGAAGATGAAGAGTTCGATGGGAACATTGTCTTGGACTTGAATCAAGACCCAACTTTAAGCATTAGTGTTTCTGATATGGTTGATTACTCTTCTGATTCATCTGATGGTTGCAAGCCTTTCTACCAAAGGGGGAAGGCCCAATCCAGAAAGAGAAGAAAGACACACAACTCGAGAAATGAAGAACTGATTGATGTAGAGATTCAGCCAGAAGTTGTTGTCAATTTGGTTAATAACCGAAAGAAGAAAAAACCAAGGAAAAACAGAAAGGGGGGTTCTGACACAGTATTACTATGGCATGCTTGGGAAGAGGAGCATGAAAGGTGGATCGATGAGAATTTATCAGCAGATGCTAACTTAGATCATCAAAGTGAAGAAATGAATGAAACTGCTGAGCCATCCTCGGATCTGACTATGCCTTTGTTGAGGTACCAAAAGGAATGGTTAGCATGGGCTTTGAAGCAGGAAAGTTCTGTGTCAAGAGGAGGAATCCTTGCAGATGAGATGGGGATGGGGAAGACTATTCAAGCAATTACCCTAGTCCTTGCTAAACGTCAATTCCAGCAAATGACTTGTGATCAAGATGAACCTGCACCTGTGGCAGGTTCATCAAGAGTCTTGCCTGCTATCAAAGGAACACTAGTTATTTGTCCTGTGGTTGCTGTCACTCAGTGGGTTAATGAGATTGACAGATTTACTTTGAAAGGAAGCACCAAGGTGCTGGTTTATCATGGGGCGAGGAGAGGAAAGAATGTTGAACAGTTATCCGAGTATGATTTTGTTATAACAACTTACTCTATTGTGGAGTCTGAGTACAGAAAATATATGATGCCTCCTAAGGAGAAGTGCCCATATTGTGGAAAATTATTTTACCTGAATAAGTTACCTTATCACCAAAAGTACTTTTGTGGACCTGATGCTGTGAGAACAGATAAACAATCAAAACAAATGAAGAAAAAGAAAAAGTTTGCTTCAAAACAGAAGACAGAAGATCCTGAGTATTGGAATGAAGAATTGGAACAAGAGGGTTTTGACAAGAAAAAGAAAGAGAAAATGGTCTCGGGAATGGATCATTTAGACACCACTGACAGGGAGAAATCATTTCTTCATGCTGTGAAGTGGCAGCGGATAATATTGGATGAGGCACACTACATAAAGTCAAGACACTGTAACACTGCAAAAGCTGTTCTTGCCTTGGACTCTTCCTACAGATGGGCGCTCAGTGGCACTCCCCTGCAGAATCGTGTTGGAGAGCTGTATTCTCTGGTTCGGTTTCTGCAAATTGTTCCTTATTCCTATTACTTTTGCAAGGACTGTGACTGCCGAGCTCTTGATCATAGCTCCTCTAAACAATGTGCAGTTTGTGGTCACAGTTCTGTTAGACATTTTTGTTGGTGGAACAAATATGTTGCCACCCCAATTCAATCGTATGGATACGGTGATTGTGGAAGAAGAGCTATGATATTGCTTAAACACAAAATTTTAAAGAACATAGTTCTAAGGCGAACTAAAACAGGCAGGGCTGCCGATCTTGCACTTCCACCCAGAATTGTTTCATTGAGGAAGGATAGCCTGGATATAAAAGAGCAAGACTATTATGAATCCTTATACAATGAAAGTCAGGCACAGTTTAACACATATGTTGAGGAAAATACTTTGATGAATAATTATGCTCATATATTTGACCTCCTCACACGGCTTCGTCAGGCTGTTGATCATCCATATCTTGTGGTATATTCTCAAACTACTGCCTTAAGAGAAGGTAACTTGCCTAGTAATGGTAATGTTGAACAAGCTTGTGGCCTGTGTCATGAGCCAGTAGAAGATCCTGTTGTTACCTCTTGTGAGCATATCTTTTGCAAGGCATGCTTGATAGACTTTTCTGCTTCCTTGGGACAAGTATCATGCCCCACATGTTCTAAGTTACTTACTGTTGATTTGACTTCAAACAAGGATGTTGGGGCTCAGGTTAATAAAACAACCATTAAAGGTTTCAGATCCTCCAGCATTCTAAACAGAATTCGGCTCGAGAACTTTCAGACAAGCACTAAAATTGAGGCACTGAGAGAAGAAATCAGATTGATGGTTGAAAGAGATGGATCTGCGAAAGCGATTGTTTTTAGTCAATTCACTTCATTCCTGGATCTCATAAATTACTCTCTGCACAAGTCAGGTGTATCTTGTGTTCAATTGAATGGAAGCATGTCATTGGCTGCTCGGGATGCTGCCATTAAGAAATTTACTGATGATCCAGACTGCAAAATTTTCCTTATGAGCTTGAAGGCCGGGGGTGTTGCTCTCAATTTAACAGTTGCATCACATGTTTTCTTGATGGACCCTTGGTGGAACCCTGCCGTGGAGCGTCAGGCTCAAGACAGAATTCACCGGATAGGGCAATATAAGCCAATCAGAATTGTCAGATTTGTCATTGAAAACACAATTGAGGAGAGGATTTTAAAGCTGCAAGAGAAAAAGGAACTAGTATTTGAAGGGACTATTGGCGGCTCCTCCGAGGCGCTGGGGAAATTGACGGAGGCTGACTTGAAGTTCCTCTTTGTTACCTAA 2706 0.4161 MELRSHRRLSQTALPGPGRGKQPRDTTEGVETNDMDGDAYVVSSDSNFEDEEFDGNIVLDLNQDPTLSISVSDMVDYSSDSSDGCKPFYQRGKAQSRKRRKTHNSRNEELIDVEIQPEVVVNLVNNRKKKKPRKNRKGGSDTVLLWHAWEEEHERWIDENLSADANLDHQSEEMNETAEPSSDLTMPLLRYQKEWLAWALKQESSVSRGGILADEMGMGKTIQAITLVLAKRQFQQMTCDQDEPAPVAGSSRVLPAIKGTLVICPVVAVTQWVNEIDRFTLKGSTKVLVYHGARRGKNVEQLSEYDFVITTYSIVESEYRKYMMPPKEKCPYCGKLFYLNKLPYHQKYFCGPDAVRTDKQSKQMKKKKKFASKQKTEDPEYWNEELEQEGFDKKKKEKMVSGMDHLDTTDREKSFLHAVKWQRIILDEAHYIKSRHCNTAKAVLALDSSYRWALSGTPLQNRVGELYSLVRFLQIVPYSYYFCKDCDCRALDHSSSKQCAVCGHSSVRHFCWWNKYVATPIQSYGYGDCGRRAMILLKHKILKNIVLRRTKTGRAADLALPPRIVSLRKDSLDIKEQDYYESLYNESQAQFNTYVEENTLMNNYAHIFDLLTRLRQAVDHPYLVVYSQTTALREGNLPSNGNVEQACGLCHEPVEDPVVTSCEHIFCKACLIDFSASLGQVSCPTCSKLLTVDLTSNKDVGAQVNKTTIKGFRSSSILNRIRLENFQTSTKIEALREEIRLMVERDGSAKAIVFSQFTSFLDLINYSLHKSGVSCVQLNGSMSLAARDAAIKKFTDDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFVIENTIEERILKLQEKKELVFEGTIGGSSEALGKLTEADLKFLFVT 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241761g00009 901 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 420 899 IPR027417 -
Stsc241761g00009 901 Gene3D - 354 565 IPR038718 -
Stsc241761g00009 901 SMART ring_2 647 686 IPR001841 -
Stsc241761g00009 901 ProSiteProfiles Zinc finger RING-type profile. 647 687 IPR001841 -
Stsc241761g00009 901 SUPERFAMILY RING/U-box 634 691 - -
Stsc241761g00009 901 ProSitePatterns Zinc finger RING-type signature. 662 671 IPR017907 -
Stsc241761g00009 901 Gene3D - 566 899 IPR027417 -
Stsc241761g00009 901 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 201 476 IPR014001 -
Stsc241761g00009 901 MobiDBLite consensus disorder prediction 1 41 - -
Stsc241761g00009 901 CDD DEXDc_SHPRH-like 188 549 - -
Stsc241761g00009 901 Pfam Helicase conserved C-terminal domain 731 845 IPR001650 -
Stsc241761g00009 901 CDD SF2_C_SNF 729 856 - -
Stsc241761g00009 901 SMART ultradead3 184 494 IPR014001 -
Stsc241761g00009 901 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 73 899 - -
Stsc241761g00009 901 SMART helicmild6 762 845 IPR001650 -
Stsc241761g00009 901 MobiDBLite consensus disorder prediction 75 106 - -
Stsc241761g00009 901 Pfam zinc-RING finger domain 647 688 IPR001841 -
Stsc241761g00009 901 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 727 891 IPR001650 -
Stsc241761g00009 901 Gene3D - 190 330 IPR038718 -
Stsc241761g00009 901 Pfam SNF2-related domain 203 624 IPR000330 GO:0005524|GO:0140658
Stsc241761g00009 901 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 637 725 IPR013083 -
Stsc241761g00009 901 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 147 549 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241761g00009 Stsc-Chr241761 101827 109490 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241761g00009 120 901 RAD5 or RAD16-like Gene Family AT1G05120 67.903 0.0 1092
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Stsc241761g00009 SNF2_N 8.9e-50 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241761g00009 K15083 - gmx:100786366 1306.97