LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc241761g00007	ATGGGGGCCATAAAATCAGCCATTGGAGATGCAATCTTAACATCAATATGGGTCTTCAGCCTCTCATCACAAAGGATTATCTTATCAGAGATATCTTCATTTCTTGGATTCAAACCATTCACACCCCCATCACTGTTCCTCTCAACAATCATAAACACCACCATGGTCCTCACCGTATCCTTCATTGGGAGGCTCTTAGGTGGTGCAAGCTTCAATCCTTCATCCACAGTTTCATCCCACTTCTTAGGCCTAAGGCCAGATTCATCACTCTCATCATTGGCCATTAGGTTCCCTGCTCAAGCATTTGGTGGGGCTCTTGGAGCAAAAGGGGTACTTTCTGTGATGCCCCCACAGTATATGATTTTGCTGAAAGGTCCTTACTTGAAGGTGGATTTGCACACTGGTGCTTTTGTTGAAGGAGCATTGGTTTTTGCACATAACTTGGCTATATTCATTGTTGCTATGAAGGGTCCTAAGAATCCTTTCTTGAAGATTTATATGATATCTCTGACAACTTTGACTTTGGGTATTTGTGGTTCTGGTTACACTGGACCTTCTATGAACCCTGCAAATGCATTTGGTTGGGCTTATATGTATGATAGGCATATGAATTTGGAGCTGTTTTATGTGTATTGGATTTGTCCTTTTATTGGGGCAATTTTTGCTGCTTTGGTTTATAAGACTCTCTTTATGTCACCACCAGAGATGATGAAGAAGAAGAAGAAAGCTTGA	732	0.4153	MGAIKSAIGDAILTSIWVFSLSSQRIILSEISSFLGFKPFTPPSLFLSTIINTTMVLTVSFIGRLLGGASFNPSSTVSSHFLGLRPDSSLSSLAIRFPAQAFGGALGAKGVLSVMPPQYMILLKGPYLKVDLHTGAFVEGALVFAHNLAIFIVAMKGPKNPFLKIYMISLTTLTLGICGSGYTGPSMNPANAFGWAYMYDRHMNLELFYVYWICPFIGAIFAALVYKTLFMSPPEMMKKKKKA	243

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc241761g00007	243	SUPERFAMILY	Aquaporin-like	4	236	IPR023271	-
	Stsc241761g00007	243	Coils	Coil	237	243	-	-
	Stsc241761g00007	243	Pfam	Major intrinsic protein	53	226	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Stsc241761g00007	243	Gene3D	Glycerol uptake facilitator protein.	2	242	IPR023271	-
	Stsc241761g00007	243	PRINTS	Major intrinsic protein family signature	209	229	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Stsc241761g00007	243	PRINTS	Major intrinsic protein family signature	169	191	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Stsc241761g00007	243	PRINTS	Major intrinsic protein family signature	92	111	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Stsc241761g00007	243	PRINTS	Major intrinsic protein family signature	52	76	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Stsc241761g00007	243	PANTHER	AQUAPORIN SIP1-1	1	241	IPR044222	GO:0015250

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc241761g00007	Stsc-Chr241761	82201	82932	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc241761g00007	1	243	Major Intrinsic Protein MIP	AT5G18290	39.344	1.87e-49	160

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc241761g00007	K09875		-	gmx:100797126	309.686