Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241761g00002 ATGCCGAGACGGGTCAATGATGACGATAACAATCACAACCGCGAAGATAAAGAAGTTGTATCAAGGGAGGAAAGTGGTGAAAAGATTTGCAGAGGGAAAACAAAGAAAGGGCCATGGACACTCTCGGAAGATATAATGTTGAGAGAGTATGTGATGAAGTATGGTGAAGGAAATTGGAACTCTGTGCAAAAGAATTCAGGGTTGGCAAGGTGTGGCAAAAGTTGTAGGCTTAGATGGGCCAATCATCTTAGACCTAATTTGAAGAAAGGTTCATTTTCTAAAGAAGAAGAAGATTTAATTGTTCAACTTCATGCTAAGCTTGGAAATAAATGGGCTCGAATGGCAGCACAGCTACCTGGGAGAACAGATAATGAAATAAAAAACTTTTGGAACACAAGAGTAAAAAGGTGCCAAAGAGCTGGATTACCACTTTATCCACCACAAGTGTTGCATGAAGCCAATGTATACCATCTTCAACAACATCTCAAACCTCAACCATCATCATCTTCTTCATCATCTTTCTCATTTTCTCCATTATTTATATCTTCCTCTAATAATCAAGAAATCAATCAACTAAAGCTAATAAGCCACCCTCCTTCTTCAAATAATAATCAACAAAACCCACCCCATTCCTCTTGTTTATCCAATCCACAACCATACCCACAATTCAAGTTTCCAATTGAAAACCCTAATAATACAAATAATGCAAATTTAGGGTTCCCATTATCTCCTATTTCCACAACTTCCTCTTTGTTTAACCAAAGTTATCATAATGTAAATAATAACCCAAATGATTATCATTTAGGAAGCTATAACTATAGGTTCCATTCCAATAATCATAATCATAAAAATGCTATAATAATGCCAAATTCTCCATTTGAAGCACTTCCTCCTTTGATTCAAGGCTCAAATAATAACAACAATAACAATGAAGCATGTTTAAGCCAATCATCACCACCACCTAGCTCAACAACACCAACTTCATCTTATGCTAGTGGCAATAATGGCTACTTAATGGGAGGAGGAGGAGCTTCAAGCATGGTTAACAATGTGGGCGGAGGCGGCGGCGGCCGTGGATCCAATAATGTTGCACCACCGCCGGTATCGCCGCCGCCTGAAGAACATGGTGGTGGGTTTTTGGGTGCAGTTGTGGTGGAAGCTCAAAGCCTTTGTAACAGCAACAATAAAGACAAGTGTAAGAGAGATAATGAGGATTCAACTGCATCACAGGTTTTATCTCATAAAAGAAAATTTGTAGTGACTACTAATGAGGAATGTGCAAAAGAAGAAGAGACTAATAAGAATAATGTGGTTCTGGAGTCAGATATCAAAAGCAATGGAGATACTACTATTAATAATAAAATACAGAAGGTTGATTTGCACTCTTCTCCATTTTCAACAGGGAATAAACAAACTAGTGCTGAGGAAGAATTGGAGATGAATAGCATGGACGATGACTTATTTGGGTTACTTAAAAACTTTCAAGAAATGCCAGTTCCAGATTGGTACCACAAAAGAGGACAATCATTGGGACTTGAAACTCATCATCATCATCAACAAGATGCTTCATTATTGGGCTCCATAGATCAAGCATTTTCAACTCATCATGATAGTTTTTGGAGAAATTAA 1629 0.3781 MPRRVNDDDNNHNREDKEVVSREESGEKICRGKTKKGPWTLSEDIMLREYVMKYGEGNWNSVQKNSGLARCGKSCRLRWANHLRPNLKKGSFSKEEEDLIVQLHAKLGNKWARMAAQLPGRTDNEIKNFWNTRVKRCQRAGLPLYPPQVLHEANVYHLQQHLKPQPSSSSSSSFSFSPLFISSSNNQEINQLKLISHPPSSNNNQQNPPHSSCLSNPQPYPQFKFPIENPNNTNNANLGFPLSPISTTSSLFNQSYHNVNNNPNDYHLGSYNYRFHSNNHNHKNAIIMPNSPFEALPPLIQGSNNNNNNNEACLSQSSPPPSSTTPTSSYASGNNGYLMGGGGASSMVNNVGGGGGGRGSNNVAPPPVSPPPEEHGGGFLGAVVVEAQSLCNSNNKDKCKRDNEDSTASQVLSHKRKFVVTTNEECAKEEETNKNNVVLESDIKSNGDTTINNKIQKVDLHSSPFSTGNKQTSAEEELEMNSMDDDLFGLLKNFQEMPVPDWYHKRGQSLGLETHHHHQQDASLLGSIDQAFSTHHDSFWRN 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241761g00002 542 MobiDBLite consensus disorder prediction 195 239 - -
Stsc241761g00002 542 ProSiteProfiles Myb-like domain profile. 31 83 IPR001005 -
Stsc241761g00002 542 MobiDBLite consensus disorder prediction 195 219 - -
Stsc241761g00002 542 CDD SANT 91 132 IPR001005 -
Stsc241761g00002 542 MobiDBLite consensus disorder prediction 1 34 - -
Stsc241761g00002 542 FunFam MYB-related transcription factor 35 88 - -
Stsc241761g00002 542 Pfam Myb-like DNA-binding domain 89 132 IPR001005 -
Stsc241761g00002 542 Pfam Myb-like DNA-binding domain 36 83 IPR001005 -
Stsc241761g00002 542 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 31 83 IPR017930 -
Stsc241761g00002 542 SMART sant 88 136 IPR001005 -
Stsc241761g00002 542 SMART sant 35 85 IPR001005 -
Stsc241761g00002 542 Gene3D - 91 137 - -
Stsc241761g00002 542 ProSiteProfiles Myb-like domain profile. 84 134 IPR001005 -
Stsc241761g00002 542 MobiDBLite consensus disorder prediction 225 239 - -
Stsc241761g00002 542 Gene3D - 35 88 - -
Stsc241761g00002 542 FunFam Transcription factor GAMYB 91 137 - -
Stsc241761g00002 542 MobiDBLite consensus disorder prediction 297 333 - -
Stsc241761g00002 542 CDD SANT 38 83 IPR001005 -
Stsc241761g00002 542 SUPERFAMILY Homeodomain-like 35 130 IPR009057 -
Stsc241761g00002 542 MobiDBLite consensus disorder prediction 348 378 - -
Stsc241761g00002 542 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 84 138 IPR017930 -
Stsc241761g00002 542 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 10 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241761g00002 Stsc-Chr241761 9870 12792 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241761g00002 35 180 MYB Transcription Factor Family AT4G26930 69.799 4.72e-66 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc241761g00002 Myb_DNA-binding 1.9e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241761g00002 K09422 - gmx:100784779 325.865