Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241759g00005 ATGGCTATTACAATGCTCTCACCAGCGAACCTTCTTTCCCTCGCAGCTCCATCCCCAAGTTCCTCTTCCCCAACCTTATACTTCAAACCTGCCACAAATGTCTCGCATCCATTTTCTCTGAAGTCGGTGCCTTCTCTTGTTGCCGGAACTTCCAAACGCAATAGATTCAGCGTTCGGAGACCTTTTGCGGTGGCCGCAGAAGAAGCCGCGGTTACCACATCGATGGAAGCTGCAAGGAGGCTGTATGTTGGCAACATTCCTCGCACTGTCACCAACGATGAGCTCAAGAACATCGTTGAAGAGCATGGCGCTGTTGAGAAAGCTGAGGTTATGTATGATAAATACTCTGGGCGGAGTCGTCGCTTTGCGTTTGTTACGATGAAAACTGTTGAGGATGCAAATGCAGTTGTTGAGAAACTTAATGGCACTGAAATTGGAGGACGTGAGGTCAAGGTAAATATAACCGAAAAACCTTTGTCAACAGCAGACACATCTTTCCTTCAGGCCGATGAGTCCAACTTTGTTGACAGCCCCCACAAGGTATATGTCGGAAATCTGGCCAAGACAGTAACATCAGATACACTTAAAACATTTTTCTCTGAAAAGGGAAAAGTACTTAGTGCCAAGGTCTCACGGGTTCCGGGGACCTCAAAGTCGAGTGGCTATGGCTTTGTTAGTTTTTCTTCTGATGAGGATGTAGAAGCTGCAATCTCGTCTTTCAACAATGTGTCATTAGAGGGGCAAACAATTCGCGTGAATAAGGCTTAG 768 0.4648 MAITMLSPANLLSLAAPSPSSSSPTLYFKPATNVSHPFSLKSVPSLVAGTSKRNRFSVRRPFAVAAEEAAVTTSMEAARRLYVGNIPRTVTNDELKNIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDANAVVEKLNGTEIGGREVKVNITEKPLSTADTSFLQADESNFVDSPHKVYVGNLAKTVTSDTLKTFFSEKGKVLSAKVSRVPGTSKSSGYGFVSFSSDEDVEAAISSFNNVSLEGQTIRVNKA 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241759g00005 255 SUPERFAMILY RNA-binding domain, RBD 67 157 IPR035979 GO:0003676
Stsc241759g00005 255 PANTHER OS02G0815200 PROTEIN 31 254 - -
Stsc241759g00005 255 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 181 251 IPR000504 GO:0003723
Stsc241759g00005 255 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 81 151 IPR000504 GO:0003723
Stsc241759g00005 255 FunFam 30S ribosomal protein 2, chloroplastic 166 255 - -
Stsc241759g00005 255 SMART rrm2_1 180 253 IPR003954 GO:0003676
Stsc241759g00005 255 SMART rrm2_1 80 153 IPR003954 GO:0003676
Stsc241759g00005 255 Gene3D - 49 163 IPR012677 -
Stsc241759g00005 255 Gene3D - 164 255 IPR012677 -
Stsc241759g00005 255 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 179 255 IPR000504 GO:0003723
Stsc241759g00005 255 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 79 157 IPR000504 GO:0003723
Stsc241759g00005 255 SUPERFAMILY RNA-binding domain, RBD 174 255 IPR035979 GO:0003676
Stsc241759g00005 255 SMART rrm1_1 180 253 IPR000504 GO:0003723
Stsc241759g00005 255 SMART rrm1_1 80 153 IPR000504 GO:0003723
Stsc241759g00005 255 CDD RRM1_PSRP2_like 80 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241759g00005 Stsc-Chr241759 43120 45863 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241759g00005 77 255 Eukaryotic Initiation Factors Gene Family AT4G34110 30.168 3.14e-17 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241759g00005 K13126 - gmx:100783567 329.331