Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241758g00017 ATGGATTTGACAGCGGAGAAGAAGGAATTTGACACCAACAACAATGCTAACTCCGAACCCGACGAACGCTATGCTCGTGACCTTAAAGCTGCTCTTCACCCTCTTAAGCACAAATTTGTGTTTTGGTACACACGGCGAACACCGGGAGTTCGAAATCAAACATCTTATGAGGATAACATAAAGAAAATTGTTGATTTCAGTACGGTTGAAGGATTTTGGGTTTGCTATTGCCATCTTGCTCGACCTTCTTCTTTGCCTAGTCCGACAGATTTGCACCTTTTTAAGGAAGGAATTCGACCCCTATGGGAGGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGGTTCAAAAAGGCTGTCTCAGGTCGTTTTTGGGAGGACCTGGTTCTTGCCTTAGTAGGTGACCAATTAGATTATGGAGATAACATATGTGGTGTCGTACTTAGCATTCGTTTTAACGAGGATATACTTAGCATCTGGAATCGCAATGCTTCTGACAATCAGGCTGTAATGGCTCTCAGAGATTCCATTAAGCATCATTTGAAGCTTCCTCACGGCTATATTATGGAGTACAAACCCCATGATGCCTCCCTAAAGGACAATTCATCTTACAGGAACACTTGGTTAAGAGGCTAG 639 0.4304 MDLTAEKKEFDTNNNANSEPDERYARDLKAALHPLKHKFVFWYTRRTPGVRNQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSSLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKAVSGRFWEDLVLALVGDQLDYGDNICGVVLSIRFNEDILSIWNRNASDNQAVMALRDSIKHHLKLPHGYIMEYKPHDASLKDNSSYRNTWLRG 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241758g00017 212 Gene3D RNA Cap, Translation Initiation Factor Eif4e 2 207 IPR023398 -
Stsc241758g00017 212 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED 9 202 IPR001040 GO:0003723|GO:0003743|GO:0006413
Stsc241758g00017 212 MobiDBLite consensus disorder prediction 1 22 - -
Stsc241758g00017 212 SUPERFAMILY eIF4e-like 14 208 IPR023398 -
Stsc241758g00017 212 Pfam Eukaryotic initiation factor 4E 34 192 IPR001040 GO:0003723|GO:0003743|GO:0006413
Stsc241758g00017 212 FunFam Eukaryotic translation initiation factor NCBP 5 205 - -
Stsc241758g00017 212 ProSitePatterns Eukaryotic initiation factor 4E signature. 90 113 IPR019770 GO:0003723|GO:0003743|GO:0005737|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241758g00017 Stsc-Chr241758 101937 104985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241758g00017 16 212 Eukaryotic Initiation Factors Gene Family AT5G18110 79.695 4.52e-120 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241758g00017 K03259 - rvl:131318820 399.438