Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241758g00014 ATGGAAATTCAATTCCAGCAAGAAAAACAGCACACAATGAAAAGTAACATGTCATCAATAAGCAAAGGAGGCAAACCAAAAGGAAGAAAAAGAAACAAGTTTGTTGGGGTGAGACAGAGACCTTCAGGGAGATGGGTAGCTGAAATCAAAGACTCAACTCAGAACATCAGAATGTGGCTTGGCACTTATGAGACTGCAGAGGAAGCAGCCAGAGCCTACGACGAAGCCGCCCGCCTCCTTCGCGGCTCTGCCGCTCGAACCAACTTCATCACTACTCATTTGTCATCGTCCTTAGATTCTCCTGTGGCTTCCCGGATTCGGAATCTTCTTAACAGCAAAAAGAGTGTGGCCGCAAGAAGAAGCAGCAGCAGCAGCAACAGCAGTGCTAATAATAATTCAAGCAACGATGAGAGCGTCGAGAACTCGTCATCATCGCTTTCGAATTCTTGCGAGACAATAACACAAAGTACGCCAACAATACTATCTGATGATGATAACGCTTATAGACCGGATTTGAGCAGTTTTGGTGAGAAGTTTGATGGCTTTGCTGAAGCAAGAGAGTTGGTGGAGTTTGACAGAGAAGTATCAGGTTCACTTTATCCAATTCATGGATTCATGGATGCTTTTGAAGTTAAGGACACTAATGAATCTATCTGGGATCTTCCACCTTTGAGCTCATTTTTCTCTTAA 690 0.4391 MEIQFQQEKQHTMKSNMSSISKGGKPKGRKRNKFVGVRQRPSGRWVAEIKDSTQNIRMWLGTYETAEEAARAYDEAARLLRGSAARTNFITTHLSSSLDSPVASRIRNLLNSKKSVAARRSSSSSNSSANNNSSNDESVENSSSSLSNSCETITQSTPTILSDDDNAYRPDLSSFGEKFDGFAEARELVEFDREVSGSLYPIHGFMDAFEVKDTNESIWDLPPLSSFFS 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241758g00014 229 Gene3D AP2/ERF domain 32 91 IPR036955 GO:0003700|GO:0006355
Stsc241758g00014 229 MobiDBLite consensus disorder prediction 1 22 - -
Stsc241758g00014 229 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700|GO:0006355
Stsc241758g00014 229 MobiDBLite consensus disorder prediction 1 39 - -
Stsc241758g00014 229 MobiDBLite consensus disorder prediction 114 163 - -
Stsc241758g00014 229 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 19 154 - -
Stsc241758g00014 229 SUPERFAMILY DNA-binding domain 33 90 IPR016177 GO:0003677
Stsc241758g00014 229 MobiDBLite consensus disorder prediction 114 166 - -
Stsc241758g00014 229 CDD AP2 33 89 IPR001471 GO:0003700|GO:0006355
Stsc241758g00014 229 SMART rav1_2 33 96 IPR001471 GO:0003700|GO:0006355
Stsc241758g00014 229 FunFam ethylene-responsive transcription factor RAP2-11 32 91 - -
Stsc241758g00014 229 PRINTS Ethylene responsive element binding protein signature 56 72 IPR001471 GO:0003700|GO:0006355
Stsc241758g00014 229 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700|GO:0006355
Stsc241758g00014 229 Pfam AP2 domain 33 82 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241758g00014 Stsc-Chr241758 93914 94651 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241758g00014 8 229 AP2-EREBP Transcription Factor Family AT5G19790 38.868 2.37e-38 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc241758g00014 AP2 3.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241758g00014 K09286 - gmx:100796898 167.162