Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241758g00013 ATGTGTAGAGCAAGAGCTAATAGAACAGCAGTAACGTCTGAATCGTTTGAGATCCCACGTGGCCAAGGTCGTGGTGGTGAAGACATTGAGTTAGGAGCATATGGAATGAACTCAGGAGAACTGGGCTTGAACTTTTTCTTCAAAAAGATTCAAGAGCTTGATAAACAATATGCTAAGCTGGATACGCTTTTGAGAAAGCTCCAGGATGCCCATGAGGAGTCAAGATCTGTGACCAAGGCTCCTGACATGAAGGCTATTAAAGAGAGAATGGAGAAAGATGTTGATGAAGTTAAAAAAACTGGATATTACATAAAGACAAAAATTGAAGAACTGGACAAAGAGAATTTGGCAAACAGGCAGAAACCTGGGTGTGGAAAAGGATCAGGTGTTGACCGATCACGAACAGCAACAACTATTAACTTGAAAAAGAAGCTAAAGGACAAGATGGCTGAATTTCAGACCCTTAGAGAAGCCATTCATCAAGAGCACCGTGAAGTTGTTGAGAGACGTGTGTTTACAGTAACGGGCACAAGAGCTGATGAGGAGACAATTGACAGATTAATTGAGACTGGTGATAGTGAGCAAATTTTCCGGAAGGCAATTCAGGAACAAGGAAGAGGGCAGATAGTGGACACTCTAGCAGAAATTCATGAGCGCCATGAAGCAGCTAGAGATGTTGAGAAGAAGCTTGTTGAATTACAACAGATATTCATGGATATGGCAGTATTAGTCGATGCACAAGGTGATATGCTTAACAACATAGAGACACAGGTTTTAGGTGCAGTAGATCATGTGCAACAGGGCAACACAGCCCTCAATAAGGCAAAGAAGCTTCAAAGGAAATCTAGAAAATGGATGTGCATTGCAATCTTAATATTTCTCATCATTGTTATAATCATCGTTGCCAGTGTCATCAAACCATGGCTTGCCAAAAAGCAGGGTGTTTAA 948 0.4135 MCRARANRTAVTSESFEIPRGQGRGGEDIELGAYGMNSGELGLNFFFKKIQELDKQYAKLDTLLRKLQDAHEESRSVTKAPDMKAIKERMEKDVDEVKKTGYYIKTKIEELDKENLANRQKPGCGKGSGVDRSRTATTINLKKKLKDKMAEFQTLREAIHQEHREVVERRVFTVTGTRADEETIDRLIETGDSEQIFRKAIQEQGRGQIVDTLAEIHERHEAARDVEKKLVELQQIFMDMAVLVDAQGDMLNNIETQVLGAVDHVQQGNTALNKAKKLQRKSRKWMCIAILIFLIIVIIIVASVIKPWLAKKQGV 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241758g00013 315 CDD SynN 46 200 IPR006011 GO:0016020
Stsc241758g00013 315 ProSitePatterns Syntaxin / epimorphin family signature. 219 259 IPR006012 GO:0005484|GO:0006886|GO:0016020
Stsc241758g00013 315 Gene3D - 206 306 - -
Stsc241758g00013 315 SUPERFAMILY t-snare proteins 42 268 IPR010989 GO:0016020|GO:0016192
Stsc241758g00013 315 Coils Coil 50 73 - -
Stsc241758g00013 315 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 213 275 IPR000727 -
Stsc241758g00013 315 FunFam Syntaxin 132 206 306 - -
Stsc241758g00013 315 SMART SynN_4 38 164 IPR006011 GO:0016020
Stsc241758g00013 315 Pfam Syntaxin 46 248 IPR006011 GO:0016020
Stsc241758g00013 315 PANTHER SYNTAXIN 48 296 IPR045242 -
Stsc241758g00013 315 FunFam Syntaxin 132 38 167 - -
Stsc241758g00013 315 CDD SNARE_syntaxin1-like 212 274 - -
Stsc241758g00013 315 MobiDBLite consensus disorder prediction 1 23 - -
Stsc241758g00013 315 Coils Coil 142 162 - -
Stsc241758g00013 315 SMART tSNARE_6 208 275 IPR000727 -
Stsc241758g00013 315 Gene3D - 42 167 - -
Stsc241758g00013 315 Pfam SNARE domain 249 301 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241758g00013 Stsc-Chr241758 86916 92183 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241758g00013 28 311 SNARE and Associated Proteins AT3G03800 72.535 4.10e-141 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241758g00013 K08486 - gmx:100306329 477.248