Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241756g00011 ATGGCAAGTCAAGGTTCAAATGAAGGCTCCAGTTCTGGCACTACATCGGTGGACTGTTCAGATTCAACTGTTCAGCTAAACATCAAGACTCTAGATTCACGTGTCTACAATTTTCAACTGGACAAAAATATGCCTGTTTCCTTATTAAAGGAGAAAATCGCAAATGAAATTGGTCTTCCAGTTGGTCAGCAACGGCTGATATTCAGAGGAAAAGTCTTAAAGGACGAGCATGTTCTATCTGAGTATCATGTTGAGAATGGGCATACCTTGCATTTAGTGGAAAGGCAACCAAATCAATCACAGGCTTCTGGTAATAGTACTGGTGAGCCAGCTGGTGCTAATGGTAATGCAGGAAATGATGCGCCTCCTCGTAACCGTGTTGGACAAATTTCACACAGTGTTGTTCTTGGAACTTTTAATGTAGGGGACCAAGGGGAAGGCGTGGTTCCTGACCTTACGCGGGTTATTGGGGCAGTTTTGAATTCTATTGGAATTGGTGGTCAGAACACAAGTAGTCCTCCCAATGCTACCCAAACTTCTACAGCTCCATCAGGGAATGAAGCTGTGGGAGTGCATTCTGGGAATCAAAATGCATCTGGAACTCAAGCACAGGCTGGTCAGACATTTCCTGGTCAGGCATTCCAATCTCTGCCTCAAGTTGTTCAGATTCCCGTGGCTTCTGGAGGCATACCCATCCCTTCTCTCAACGCTCCAATTCCTGATGCATTGAACACGCTCTCTGAATTTATAAATTGCATGGAACAGACACTATCGCAAAATGGTTATGACTCAAATTTACCTTCAACTAATGCTGGAGATCAACGGGCTGAATTGCCTACCAATGCACAAGGGTTGCCGACAGTTGAAGCATTAAGCACCATCTTGCATCGTACAGAACAGTTGCTTAGTCATCATGCTGTTGCTGCATTATCTCATATTGCTGGACGATTGGAGCGAGAGGGAACTTCGTCTGATTTAAGTATAAGGGGTCAAATACAGTCAGAGTCAGCACAATTAGGACTTGCAATGCAGCATTTGGGCACACTCTTACTTGAGCTTGGCCGAACAATGTTAACCTTGCGGATGGGACAGTCTCCTGCTGAATCTGCTGTAAATGCTGGACCTGCAGTTTATATTTCTCCATCAGGGCCAAATCCTGTAATGGTGCAGCCCTTTCCTCTTCAGACAAACTCACTCTTTGGTGGTCCTATTCCTTCTTCAACTTCTCCGGCATTTGGTGCCATTGGTATTGGAAGTGCTCCGCGGAATGTGAACATTCATATACACGCTGGTACTGCTCTTGCACCCATTGTTTCAGCAATTAGTTCTAGGACAAATAACGGAGAAGGGACAAGAAATGAAAACCGTAATGAGTCTGGCCCTGGGGATTCTGGTTCTGCACGTGTGTTACCTGTTAGAAATTTCATGTCACCAGCCTTCCCATCTCACCCTCCTGCTGTTGGAGTTGCCAGTGGCACACAGACTGGGTTAGGTGTTTCCACTTCACAGCCACCTTCTGATTCAGCTCCATGGACATCTGCTGTAAATGAAGCGAATTTCTTTAGGAACTTAGTTCGTAATATGCAAGGAGATAACACGGCTCAATCAGGTCAAATGGCATCAACTGGCCAAGACTTGTCTTCTGGTTCTGAATCAAGGCCTGCCCAGAGAGATGAGCAGGCAGATACCACTGGGCTGAATGGCTTCAGAACTGCAACTACATCCTCATTTGGCTGTGGCTCTCCCCAAACTGAGGCAGCGCAAACCTGTGGTAATGATGGGAGAGGTGTTTCAGTTGACAATCGTGCTTCAAGTTCTTCCGGTCAAGCTTTACAAATTTCATCTGGTGGAGAAACAACAGCAAAATCAGAACAAGTAGAGGGCACTTCATCTGCAAGTGTAAAACAAAGTGTAGCTGAACCTGCCAGAGCTGCTCCTCTTGGATTGGGCATGGGTGGCTTGGAGCGTAAGAGGCGGACGCGACTTCAACCTCCTGTAAGTAAAGGTGCTGATGGATCATCCGGTTCTTCTGTCAACCAAAGTCAGCAAACTGGAACAGAGGGTCAACACACATTGCAAACTCTTGCAAGTCATGGCTCTTCTATGAATGCAAGAAATCTTAATGGACCATCCCAGCAGCCGTTGCCCTCTGGTGATAGGCAGATCGATATGGCTGGTTTGATGTCTCAGGTTTTGCATAGCCCTGCTTTGAATGGTCTGCTTGAAGGGGTTTCACAGCAAACTGGGGTTGACTCACCTAATGGCTTGAGGAATATGTTGCAGCAGTTCACGCAGAGTCCACAGATGATGACCACGGTCAATCAAATCGTCCAACAGGTTGGCAGTCAGGATATGGGAAATATGTTTGCTGGAATGGAAAGGGGGCAAGGGGGTGGTATTGACTTGTCAACTATGCTTCAACAGATGATGCCTATTGTATCCCGAGCCCTTGGTGGGGATACTCCTCGTCCACTATTCTCTGCTGCAGAACCTGAGACCTTGGCACCCTACAGAGATGAAAACTCCAACAATACAACTTTACAGCTCAACCTTCAAGAAGTGGTGGATAGGATTGACCACTTGAGCTCACCAACAGATGTTTTCCGTGCTGTAGCTGAAAATGCTGCCCGGGGTGGAAATGTTACCAATGATATTCTGGACGAGTTATGCAGTAATGAGAGTCTTGCCAGCGAATATTTGGAGACATTGCGATATGATGTGAGACAGCGGCTCAATGGACATTCTGAGCAGGACAAGCCTTAA 2763 0.4644 MASQGSNEGSSSGTTSVDCSDSTVQLNIKTLDSRVYNFQLDKNMPVSLLKEKIANEIGLPVGQQRLIFRGKVLKDEHVLSEYHVENGHTLHLVERQPNQSQASGNSTGEPAGANGNAGNDAPPRNRVGQISHSVVLGTFNVGDQGEGVVPDLTRVIGAVLNSIGIGGQNTSSPPNATQTSTAPSGNEAVGVHSGNQNASGTQAQAGQTFPGQAFQSLPQVVQIPVASGGIPIPSLNAPIPDALNTLSEFINCMEQTLSQNGYDSNLPSTNAGDQRAELPTNAQGLPTVEALSTILHRTEQLLSHHAVAALSHIAGRLEREGTSSDLSIRGQIQSESAQLGLAMQHLGTLLLELGRTMLTLRMGQSPAESAVNAGPAVYISPSGPNPVMVQPFPLQTNSLFGGPIPSSTSPAFGAIGIGSAPRNVNIHIHAGTALAPIVSAISSRTNNGEGTRNENRNESGPGDSGSARVLPVRNFMSPAFPSHPPAVGVASGTQTGLGVSTSQPPSDSAPWTSAVNEANFFRNLVRNMQGDNTAQSGQMASTGQDLSSGSESRPAQRDEQADTTGLNGFRTATTSSFGCGSPQTEAAQTCGNDGRGVSVDNRASSSSGQALQISSGGETTAKSEQVEGTSSASVKQSVAEPARAAPLGLGMGGLERKRRTRLQPPVSKGADGSSGSSVNQSQQTGTEGQHTLQTLASHGSSMNARNLNGPSQQPLPSGDRQIDMAGLMSQVLHSPALNGLLEGVSQQTGVDSPNGLRNMLQQFTQSPQMMTTVNQIVQQVGSQDMGNMFAGMERGQGGGIDLSTMLQQMMPIVSRALGGDTPRPLFSAAEPETLAPYRDENSNNTTLQLNLQEVVDRIDHLSSPTDVFRAVAENAARGGNVTNDILDELCSNESLASEYLETLRYDVRQRLNGHSEQDKP 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241756g00011 920 MobiDBLite consensus disorder prediction 532 637 - -
Stsc241756g00011 920 ProSiteProfiles Ubiquitin domain profile. 24 99 IPR000626 GO:0005515
Stsc241756g00011 920 MobiDBLite consensus disorder prediction 1 20 - -
Stsc241756g00011 920 FunFam Large proline-rich protein BAG6 16 109 - -
Stsc241756g00011 920 SUPERFAMILY Ubiquitin-like 17 98 IPR029071 -
Stsc241756g00011 920 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 11 918 - -
Stsc241756g00011 920 MobiDBLite consensus disorder prediction 164 204 - -
Stsc241756g00011 920 MobiDBLite consensus disorder prediction 444 512 - -
Stsc241756g00011 920 MobiDBLite consensus disorder prediction 667 718 - -
Stsc241756g00011 920 Gene3D - 12 108 - -
Stsc241756g00011 920 SMART ubq_7 24 95 IPR000626 GO:0005515
Stsc241756g00011 920 MobiDBLite consensus disorder prediction 444 462 - -
Stsc241756g00011 920 CDD Ubl_ubiquitin_like 26 93 - -
Stsc241756g00011 920 MobiDBLite consensus disorder prediction 96 113 - -
Stsc241756g00011 920 Pfam Ubiquitin family 26 96 IPR000626 GO:0005515
Stsc241756g00011 920 MobiDBLite consensus disorder prediction 493 512 - -
Stsc241756g00011 920 MobiDBLite consensus disorder prediction 532 720 - -
Stsc241756g00011 920 PRINTS Ubiquitin signature 76 97 IPR019956 -
Stsc241756g00011 920 PRINTS Ubiquitin signature 55 75 IPR019956 -
Stsc241756g00011 920 MobiDBLite consensus disorder prediction 96 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241756g00011 Stsc-Chr241756 50928 58751 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241756g00011 24 95 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 37.500 2.86e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241756g00011 - - gmx:100811870 1248.42