Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241755g00009 ATGGACGTGCCGAAACACCGTTCCGGTCGATCAACGAACCTCAGGGACGCCAACGACTCCTCCAAGATGGAAGGCACCGGCAGCTGGGACGCCCTCGAATGGACTAAGATTGAGCCAGTTTCGCGATTCGTCTCGCATACGAATCTCGATTTCTTGATTGAGGCGGAGCATGTTATCGCTGAAGGACATGGTGTTGTTCTTGTTAATACAGATGATGCGGGCATGTTGATGATAACAAATTTTCGTCTTCTTTTTCTTAGTGAGGGAACTCGTAAAGTTATTTCCCTTGGAACAATACCACTTGCTACCATTGAGAAGTTTAATAAGACAGTTGCAAAGATCCAATCAAATGCTCGCCAAGAGAAGACACCACCTCAAAGATTGCTCCAGGTGATTGGCAAAGATATGAGAATTATAGTCTTCGGTTTCAGACCTCGTACAAAACAGAGACGTATAATATTTGATGCACTACTAAGGTGTACAAAACCAGCAAGATTATGGGATCTTTATGCTTTTGCATGTGGACCTTCTAGGTTTAAGAACACAAATCCACAAGCGCGCTTATTGGAGGAGTATTTTCGGCTTCTTGGCGTACTTTCTCGTGCATCAGCCAACATGATTGAAAGTGGGTCCTTCACATTGTCAAATGACTTATGGAGAGTAAGCAGCATAAACTCCAACTATAAAATGTGTCCGAGTTATCCATTTGCTTTGCTTATTCCCAAGATCATTAGCGATGATGAAGTTCTCTTAGCTTCCAACTTTCGAGCAAGGGGTCGGCTGCCTGTAGTTTCATGGTGTCATCTTGGTACTGGAGCAGTTCTTGCACGTTCATCCCAACCCTTAGTTGGTCTGATGATGAATATGAGGAGCAATATGGATGAAAAACTTGTGGCTGCACTTTGCAGCAAACTTGATGATGGCTCACGGAGAAAGCTATATATTGCTGATGCAAGGCCTAGGAAAAATGCACTAGCTAATGGGGCAATGGGTGGTGGCTCAGAATCATCATCAAACTATTTCCAGTCAGAGGTAGTGTTTTTTGGGATAGACAACATCCATGCTATGAGAGACAGCTTTGCTCGGCTAAGAGAATACTTGGATACCCATGGAAGAGCCTCATCAGATGGAATGTCGTCATTTTTGAGACATGGTGGTTCAACGTGGGGTGGAGGCAACTTAAGTAGCATGTCTGCTTCAGTGTCAACCCTTGGGGACAGTGGATGGTTACTGCATGTTCAAAATGTTTTGGCTGGTTCAGCTTGGATTGCTGCTCGTATTGCTATGGAAAATGCTTCTGTTCTTGTGCATTGCAGCGATGGTTGGGATAGAACAAGTCAGTTGGTTGCACTTGCTAATTTGTTGCTTGATCCATATTATCGGACATTCACTGGGTTTCAGGCACTTATTGAAAAAGATTGGTTAGCATTTGGTCATCCATTTTCTGATCGTGTGGGATTGCCAGCTTTCTCTGGAAGTGAGTTAACTAGGCAGCCTTCATCTAGCAATATCGCAGCATCACCTGGACGGCAGTCATCTGGAGCATTTACATCTCCAGTCCCAGCGTCTTCTCATGCACAAACTTCTAACAACTACTCTCCCATCTTTTTGCAGTGGGTTGATTGTGTTTCTCAATTGTTGCGGATGTATCCCTCTGCTTTTGAGTTTTCTGCGGCTTTTCTGGTGGACTTCTTAGACTGCATGCTTTCATGTCGTTTTGGAAATTTCTTATGTAATAGTGAGAAGGAGAGGCTGCAATGCGATATTACTGAAAGTTGTGGATGTATGTGGCTATACTTGGCTGATTTGCGTGCATTAGAAGGAGGTTCCCATGTGCATTATAATCCCTTCTATGACCCACTGAAGCACAATGGTCCTCTTCTGCCCCCAGCAGCAGCATTAGCCCCAACATTATGGCCCCAATTCCATCTTCGTTGGGCCTGCCCTGAAGAAGCACAGGCTGGGGAGATTGAAGCAAAATGTAGGAAGATAATAACGAAATACGCCGAGTTGCAGAAGGCTAAAGAAGTGGCAGAACGAAAATCAAAAGAAATTTCGAATGCCATGGAATCACTGAATGCAGAATTACAAATTGTGAAGCAGCAAAACACATCAGCTATGAATATGGCCAATAGGGCAAACAAAGAAAACATGTCTATAAAGCGTGCAATTCAGTCAATTGGGTGCAAGGTTCACTTCTCCAATAGTGGTGATTGCATTGTGGACATTGAAAGTAATCCATTGGGAACAGCACAAAACTTCTTATATTGCTCCAGGAAAGGATCAGACGGTATCATGCTTGATGACCAAAAGGATCTGGCTGTTGCAGTAACAGTTACAGCTGATGATGACGACAATGATGGGAGCAACCCTATTGGTCGAGTATGTGAGAACCTATGCCCGTTTCGCTCTGCAGATGGAGGCTGCAGATGGCCCAATGGTGGTTGTGCACAAAGAAACAGCCAGTTTGTTGGTCTTAGGGCAAATTTTGATGCATTTGACAAACTTTCAATTGACGATAGTTATTTCAAGCCTAAGTAA 2541 0.4392 MDVPKHRSGRSTNLRDANDSSKMEGTGSWDALEWTKIEPVSRFVSHTNLDFLIEAEHVIAEGHGVVLVNTDDAGMLMITNFRLLFLSEGTRKVISLGTIPLATIEKFNKTVAKIQSNARQEKTPPQRLLQVIGKDMRIIVFGFRPRTKQRRIIFDALLRCTKPARLWDLYAFACGPSRFKNTNPQARLLEEYFRLLGVLSRASANMIESGSFTLSNDLWRVSSINSNYKMCPSYPFALLIPKIISDDEVLLASNFRARGRLPVVSWCHLGTGAVLARSSQPLVGLMMNMRSNMDEKLVAALCSKLDDGSRRKLYIADARPRKNALANGAMGGGSESSSNYFQSEVVFFGIDNIHAMRDSFARLREYLDTHGRASSDGMSSFLRHGGSTWGGGNLSSMSASVSTLGDSGWLLHVQNVLAGSAWIAARIAMENASVLVHCSDGWDRTSQLVALANLLLDPYYRTFTGFQALIEKDWLAFGHPFSDRVGLPAFSGSELTRQPSSSNIAASPGRQSSGAFTSPVPASSHAQTSNNYSPIFLQWVDCVSQLLRMYPSAFEFSAAFLVDFLDCMLSCRFGNFLCNSEKERLQCDITESCGCMWLYLADLRALEGGSHVHYNPFYDPLKHNGPLLPPAAALAPTLWPQFHLRWACPEEAQAGEIEAKCRKIITKYAELQKAKEVAERKSKEISNAMESLNAELQIVKQQNTSAMNMANRANKENMSIKRAIQSIGCKVHFSNSGDCIVDIESNPLGTAQNFLYCSRKGSDGIMLDDQKDLAVAVTVTADDDDNDGSNPIGRVCENLCPFRSADGGCRWPNGGCAQRNSQFVGLRANFDAFDKLSIDDSYFKPK 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241755g00009 846 CDD PTP-MTM-like 259 545 - -
Stsc241755g00009 846 Coils Coil 661 709 - -
Stsc241755g00009 846 MobiDBLite consensus disorder prediction 493 522 - -
Stsc241755g00009 846 ProSiteProfiles Myotubularin phosphatase domain. 199 643 IPR010569 -
Stsc241755g00009 846 ProSitePatterns Tyrosine specific protein phosphatases active site. 436 446 IPR016130 GO:0016311|GO:0016791
Stsc241755g00009 846 PANTHER MYOTUBULARIN-RELATED 22 736 IPR030564 -
Stsc241755g00009 846 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 213 647 IPR029021 -
Stsc241755g00009 846 MobiDBLite consensus disorder prediction 1 26 - -
Stsc241755g00009 846 Gene3D - 64 161 IPR011993 -
Stsc241755g00009 846 SMART gram2001c 41 111 IPR004182 -
Stsc241755g00009 846 SUPERFAMILY PH domain-like 53 174 - -
Stsc241755g00009 846 Pfam Myotubularin-like phosphatase domain 170 584 IPR010569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241755g00009 Stsc-Chr241755 39557 48433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241755g00009 1 846 Protein tyrosine phosphatase (PTP) family AT3G10550 67.135 0.0 1158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241755g00009 K18081 - gmx:100781842 1368.6